format_abund_matrix: Format ASV abundance matrix
In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes
View source: R/assign_taxonomy.R
format_abund_matrix R Documentation
Format ASV abundance matrix
Description
Format ASV abundance matrix
Usage
format_abund_matrix(
data_tables,
asv_abund_matrix,
seq_tax_asv,
output_directory_path,
metabarcode
)
Arguments
data_tables
The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences
asv_abund_matrix
The final abundance matrix containing amplified sequence variants
seq_tax_asv
An amplified sequence variants matrix with taxonomic information
demulticoder documentation built on June 8, 2025, 12:47 p.m.
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View source: R/assign_taxonomy.R
| format_abund_matrix | R Documentation |
Format ASV abundance matrix
Description
Format ASV abundance matrix
Usage
format_abund_matrix(
data_tables,
asv_abund_matrix,
seq_tax_asv,
output_directory_path,
metabarcode
)
Arguments
data_tables |
The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences |
asv_abund_matrix |
The final abundance matrix containing amplified sequence variants |
seq_tax_asv |
An amplified sequence variants matrix with taxonomic information |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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