format_database: General functions to format user-specified databases

In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes

General functions to format user-specified databases

Description

General functions to format user-specified databases

Usage

format_database(
  data_tables,
  data_path,
  output_directory_path,
  temp_directory_path,
  metabarcode,
  db_its,
  db_rps10,
  db_16S,
  db_other1,
  db_other2
)

Arguments

data_tables	The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences
data_path	Path to the data directory
output_directory_path	The path to the directory where resulting files are output
temp_directory_path	User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow
metabarcode	The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2')

Value

Formatted database(s) for the specified metabarcode type(s)

demulticoder documentation built on June 8, 2025, 12:47 p.m.