prep_abund_matrix: Prepare final ASV abundance matrix
In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes
View source: R/assign_taxonomy.R
prep_abund_matrix R Documentation
Prepare final ASV abundance matrix
Description
Prepare final ASV abundance matrix
Usage
prep_abund_matrix(cutadapt_data, asv_abund_matrix, data_tables, metabarcode)
Arguments
asv_abund_matrix
The final abundance matrix containing amplified sequence variants
metabarcode
The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2')
demulticoder documentation built on June 8, 2025, 12:47 p.m.
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View source: R/assign_taxonomy.R
| prep_abund_matrix | R Documentation |
Prepare final ASV abundance matrix
Description
Prepare final ASV abundance matrix
Usage
prep_abund_matrix(cutadapt_data, asv_abund_matrix, data_tables, metabarcode)
Arguments
asv_abund_matrix |
The final abundance matrix containing amplified sequence variants |
metabarcode |
The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2') |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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