make_cutadapt_tibble: Prepare for primmer trimming with 'Cutadapt'. Make new...

In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes

Prepare for primmer trimming with 'Cutadapt'. Make new sub-directories and specify paths for the trimmed and untrimmed reads

Description

Prepare for primmer trimming with 'Cutadapt'. Make new sub-directories and specify paths for the trimmed and untrimmed reads

Usage

make_cutadapt_tibble(fastq_data, metadata_primer_data, temp_directory_path)

Arguments

fastq_data	A data.frame containing the read file paths and the direction of the reads by sample
metadata_primer_data	A data.frame combining the metadata and primer data
temp_directory_path	User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow

Value

Returns a larger data.frame containing paths to temporary read directories, which is used as input when running 'Cutadapt'

demulticoder documentation built on June 8, 2025, 12:47 p.m.