read_fastq: Takes in the FASTQ files from the user and creates a...
In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes
View source: R/prepare_reads_count_primers.R
read_fastq R Documentation
Takes in the FASTQ files from the user and creates a data.frame with the
paths to files that will be created and used in the future. Included in a
larger 'read_prefilt_fastq' function.
Description
Takes in the FASTQ files from the user and creates a data.frame with the
paths to files that will be created and used in the future. Included in a
larger 'read_prefilt_fastq' function.
Usage
read_fastq(data_directory_path, temp_directory_path)
Arguments
data_directory_path
The path to the directory containing raw FASTQ (forward and reverse reads), metadata.csv, and
primerinfo_params.csv files.
temp_directory_path
User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow.
Value
A data.frame with the FASTQ file paths, primer orientations and
sequences, and parsed sample names.
demulticoder documentation built on June 8, 2025, 12:47 p.m.
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View source: R/prepare_reads_count_primers.R
| read_fastq | R Documentation |
Takes in the FASTQ files from the user and creates a data.frame with the
paths to files that will be created and used in the future. Included in a
larger 'read_prefilt_fastq' function.
Description
Takes in the FASTQ files from the user and creates a data.frame with the
paths to files that will be created and used in the future. Included in a
larger 'read_prefilt_fastq' function.
Usage
read_fastq(data_directory_path, temp_directory_path)
Arguments
data_directory_path |
The path to the directory containing raw FASTQ (forward and reverse reads), metadata.csv, and primerinfo_params.csv files. |
temp_directory_path |
User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow. |
Value
A data.frame with the FASTQ file paths, primer orientations and
sequences, and parsed sample names.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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