format_db_16S: An 16S database that has modified headers and is output in...

In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes

An 16S database that has modified headers and is output in the reference_databases folder

Description

An 16S database that has modified headers and is output in the reference_databases folder

Usage

format_db_16S(
  data_tables,
  data_path,
  output_directory_path,
  temp_directory_path,
  db_16S
)

Arguments

data_tables	The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences
data_path	Path to the data directory
output_directory_path	The path to the directory where resulting files are output
temp_directory_path	User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow
db_16S	The SILVA 16S rRNA reference database provided by the user

Value

The SILVA 16S rRNA database with modified headers

demulticoder documentation built on June 8, 2025, 12:47 p.m.