Files in demulticoder
Simultaneous Analysis of Multiplexed Metabarcodes
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/prepare_reads_count_primers.R
R/cut_primers_trim_reads.R
R/assign_taxonomy.R
R/format_databases.R
R/convert_asv_matrix.R
R/make_asv_abund_matrix.R
inst/extdata/S1_R2.fastq.gz
inst/extdata/S2_R1.fastq.gz
inst/extdata/metadata.csv
inst/extdata/fungidb.fasta
inst/extdata/S2_R2.fastq.gz
inst/extdata/S1_R1.fastq.gz
inst/extdata/oomycetedb.fasta
inst/extdata/primerinfo_params.csv
tests/testthat.R
tests/testthat/test_assign_tax.R
tests/testthat/test_prepare_reads.R
tests/testthat/test_cut_trim.R
tests/testthat/test_make_matrix.R
tests/testthat/test_convert_matrix.R
man/assignTax_as_char.Rd
man/format_abund_matrix.Rd
man/prepare_metadata_table.Rd
man/format_db_other1.Rd
man/createASVSequenceTable.Rd
man/get_read_counts.Rd
man/infer_asv_command.Rd
man/merge_reads_command.Rd
man/make_abund_matrix.Rd
man/read_parameters_table.Rd
man/countOverlap.Rd
man/infer_asvs.Rd
man/read_prefilt_fastq.Rd
man/format_database.Rd
man/plot_post_trim_qc.Rd
man/make_seqhist.Rd
man/orient_primers.Rd
man/plot_qc.Rd
man/process_single_barcode.Rd
man/cut_trim.Rd
man/prepare_reads.Rd
man/filter_and_trim.Rd
man/make_asv_abund_matrix.Rd
man/get_post_trim_hits.Rd
man/format_db_its.Rd
man/get_fastq_paths.Rd
man/format_db_rps10.Rd
man/format_db_other2.Rd
man/primer_check.Rd
man/convert_asv_matrix_to_objs.Rd
man/assign_tax.Rd
man/run_cutadapt.Rd
man/make_cutadapt_tibble.Rd
man/assign_taxonomyDada2.Rd
man/format_db_16S.Rd
man/get_pre_primer_hits.Rd
man/setup_directories.Rd
man/remove_ns.Rd
man/read_fastq.Rd
man/prep_abund_matrix.Rd
man/figures/demulticoder_logo_iteration1.png
man/figures/Figure1.svg
