API for ArnaudDroitLab/ef.utils
Eric Utilities
| Global functions | |
|---|---|
| annotate_chip | Man page Source code |
| annotate_region | Man page Source code |
| annotate_venn_center | Man page Source code |
| annotate_venn_exclusive | Man page Source code |
| associate_chrom_state | Man page Source code |
| associate_fitness_genes | Man page Source code |
| associate_gene_chip | Man page Source code |
| associate_genomic_region | Man page Source code |
| associate_histone_marks | Man page Source code |
| associate_is_gene_active | Man page Source code |
| associate_tf | Man page Source code |
| associate_tissue_specificity_human | Man page Source code |
| build_intersect | Man page Source code |
| build_intersect_all | Man page Source code |
| characterize_gene_set | Man page Source code |
| characterize_region | Man page Source code |
| chrom_state_match | Man page Source code |
| collapse_regions | Man page Source code |
| consensus.and.signal.mean | Source code |
| csaw.save.plots | Man page Source code |
| csaw_analyze | Man page Source code |
| default_download_filter_chip | Man page Source code |
| default_download_filter_rna | Man page Source code |
| do.GO.enrichment | Source code |
| download.chip.and.import | Source code |
| download.one.chrom.state | Man page Source code |
| download_chromatin_states | Man page Source code |
| download_encode_chip | Man page Source code |
| download_encode_histones | Man page Source code |
| download_encode_polymerases | Man page Source code |
| download_encode_rna | Man page Source code |
| download_encode_tf | Man page Source code |
| exclusive.overlap.internal | Man page Source code |
| filter.reads.to.counts | Man page Source code |
| gene_from_regions | Man page Source code |
| gene_peaks_distances | Man page Source code |
| get.chrom.state.url | Man page Source code |
| get_encode_mnemonic | Man page Source code |
| get_promoters | Man page Source code |
| histone_download_filter_chip | Man page Source code |
| import.and.discard.metadata | Man page Source code |
| import.plus.consensus | Source code |
| import_chrom_states | Man page Source code |
| import_files_into_grl | Man page Source code |
| import_into_grl | Man page Source code |
| inclusive.overlap.internal | Man page Source code |
| install_annotations | Man page Source code |
| internal.download_chrom_states | Source code |
| intersect_overlap | Man page Source code |
| intersect_venn_plot | Man page Source code |
| isoform_download_filter_rna | Man page Source code |
| kegg_enrichment | Man page Source code |
| kegg_enrichment_regions | Man page Source code |
| load_chrom_state | Man page Source code |
| motif_enrichment | Man page Source code |
| motif_enrichment_genes | Man page Source code |
| multiple.testing | Man page Source code |
| multiple_keggs_plot | Man page Source code |
| multiple_region_enrichment | Man page Source code |
| normalization.factors | Man page Source code |
| pairwise_overlap | Man page Source code |
| partition_genomic_regions | Man page Source code |
| pol2_download_filter_chip | Man page Source code |
| post_processing | Man page Source code |
| project_ranges | Man page Source code |
| read_identical | Man page Source code |
| reads.to.counts | Man page Source code |
| region_consensus | Man page Source code |
| region_enrichment | Man page Source code |
| region_enrichment_summary | Man page Source code |
| region_overlap | Man page Source code |
| select_annotations | Man page Source code |
| simple_chrom_state_map | Man page Source code |
| simplify_chrom_state | Man page Source code |
| test.diff.binding | Man page Source code |
