AddGES: Generates a GES, either internally or against an external...
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
AddGES R Documentation
Generates a GES, either internally or against an external reference.
Description
Generates a GES, either internally or against an external reference.
Usage
AddGES(pisces.obj, method = c("scale", "ecdf"), ref.mat = NULL)
Arguments
pisces.obj
A Seurat object with the 'PISCESpact' assay.
method
One of 'scale' or 'ecdf'. If not specified, will use 'scale'.
ref.mat
Optional matrix of appropriately normalized reference data (features X samples).
Value
A Seurat object with a 'ges' matrix (features X samples) added to the 'PISCESpact' assay.
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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| AddGES | R Documentation |
Generates a GES, either internally or against an external reference.
Description
Generates a GES, either internally or against an external reference.
Usage
AddGES(pisces.obj, method = c("scale", "ecdf"), ref.mat = NULL)
Arguments
pisces.obj |
A Seurat object with the 'PISCESpact' assay. |
method |
One of 'scale' or 'ecdf'. If not specified, will use 'scale'. |
ref.mat |
Optional matrix of appropriately normalized reference data (features X samples). |
Value
A Seurat object with a 'ges' matrix (features X samples) added to the 'PISCESpact' assay.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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