matrix_convert_genes: Converts the gene rownames of a matrix from the 'from' to...

In califano-lab/PISCES: Protein Activity Inferecne in Single Cells

Converts the gene rownames of a matrix from the 'from' to 'to' convention. Removes rows of the matrix for which no name in the 'to' convention can be found.

Description

Converts the gene rownames of a matrix from the 'from' to 'to' convention. Removes rows of the matrix for which no name in the 'to' convention can be found.

Usage

matrix_convert_genes(dat.mat, species, from, to)

Arguments

dat.mat	Matrix with rownames to be changed.
species	Species for this data. Either 'human' or 'mouse'.
from	Starting name convention. One of 'ensg', 'gn', or 'entrez'.
to	Ending name convention. One of 'ensg', 'gn', or 'entrez'.

Value

Matrix with converted row names.

califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.