cluster_signature_mrs: Identifies cluster specific master regulators by generating...
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
cluster_signature_mrs R Documentation
Identifies cluster specific master regulators by generating cluter-specific signatures and running NaRnEA.
Description
Identifies cluster specific master regulators by generating cluter-specific signatures and running NaRnEA.
Usage
cluster_signature_mrs(norm.counts, clust.vec, net.list)
Arguments
norm.counts
Matrix of normalized counts (features X samples).
clust.vec
Clustering vector.
net.list
List of ARACNe3 networks.
Value
A list; table of positive MRs ('positive') and negative MRs ('negative');
the cluster-specific NaRnEA results ('cluster.narnea').
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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| cluster_signature_mrs | R Documentation |
Identifies cluster specific master regulators by generating cluter-specific signatures and running NaRnEA.
Description
Identifies cluster specific master regulators by generating cluter-specific signatures and running NaRnEA.
Usage
cluster_signature_mrs(norm.counts, clust.vec, net.list)
Arguments
norm.counts |
Matrix of normalized counts (features X samples). |
clust.vec |
Clustering vector. |
net.list |
List of ARACNe3 networks. |
Value
A list; table of positive MRs ('positive') and negative MRs ('negative'); the cluster-specific NaRnEA results ('cluster.narnea').
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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