internal_ges: Generates a single-sample, internal GES.

In califano-lab/PISCES: Protein Activity Inferecne in Single Cells

Generates a single-sample, internal GES.

Description

Generates a single-sample, internal GES.

Usage

internal_ges(
  filt.counts,
  norm.method = c("cpm", "pflpf"),
  est.method = c("map", "ps"),
  map.iter = 10
)

Arguments

filt.counts	Matrix (features X samples) of filtered count data.
norm.method	Normalization method. One of ‘c(’cpm', 'pflpf')', uses 'pflpf' by default.
est.method	Estimation method. One of ‘c(’map', 'ps')', with 'map' by default.
map.iter	Number of iterations to use if using MAP estimation. Default of 10.

Value

GES Matrix (features X samples).

califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.