matrix_narnea: Runs the NaRnEA algorithm on multiple samples / regulons...
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
matrix_narnea R Documentation
Runs the NaRnEA algorithm on multiple samples / regulons simultaneously.
Description
Runs the NaRnEA algorithm on multiple samples / regulons simultaneously.
Usage
matrix_narnea(ges.mat, regulon.list, seed.val = 343, min.targets = 30)
Arguments
ges.mat
Matrix of gene expression signatures (genes X samples).
regulon.list
List of regulon lists, with am and aw values.
seed.val
Value of seed to ensure reproducibility. Default of 343.
min.targets
Minimum number of targets needed between a regulon and a GES. Default of 30.
Value
List of matrices; 'nes' and 'pes'.
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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| matrix_narnea | R Documentation |
Runs the NaRnEA algorithm on multiple samples / regulons simultaneously.
Description
Runs the NaRnEA algorithm on multiple samples / regulons simultaneously.
Usage
matrix_narnea(ges.mat, regulon.list, seed.val = 343, min.targets = 30)
Arguments
ges.mat |
Matrix of gene expression signatures (genes X samples). |
regulon.list |
List of regulon lists, with am and aw values. |
seed.val |
Value of seed to ensure reproducibility. Default of 343. |
min.targets |
Minimum number of targets needed between a regulon and a GES. Default of 30. |
Value
List of matrices; 'nes' and 'pes'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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