kappa_cluster_mrs: Identifies cluster master regulators based on Cohen's Kappa.
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
kappa_cluster_mrs R Documentation
Identifies cluster master regulators based on Cohen's Kappa.
Description
Identifies cluster master regulators based on Cohen's Kappa.
Usage
kappa_cluster_mrs(narnea.res, clust.vec, kappa.thresh = 0.5)
Arguments
narnea.res
NaRnEA result object with 'PES' and 'NES' members.
clust.vec
Vector of clustering labels.
kappa.thresh
Threshold to consider a protein an MR. Default of 0.5.
Value
A list; table of positive MRs ('positive') and negative MRs ('negative');
Stouffer integrated NaRnEA results by cluster ('cluster.narnea'); Kappa values for each protein in each cluster ('kappa.df').
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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| kappa_cluster_mrs | R Documentation |
Identifies cluster master regulators based on Cohen's Kappa.
Description
Identifies cluster master regulators based on Cohen's Kappa.
Usage
kappa_cluster_mrs(narnea.res, clust.vec, kappa.thresh = 0.5)
Arguments
narnea.res |
NaRnEA result object with 'PES' and 'NES' members. |
clust.vec |
Vector of clustering labels. |
kappa.thresh |
Threshold to consider a protein an MR. Default of 0.5. |
Value
A list; table of positive MRs ('positive') and negative MRs ('negative'); Stouffer integrated NaRnEA results by cluster ('cluster.narnea'); Kappa values for each protein in each cluster ('kappa.df').
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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