meta_narnea: Runs MetaNaRnEA using the given ges matrix and network list.
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
meta_narnea R Documentation
Runs MetaNaRnEA using the given ges matrix and network list.
Description
Runs MetaNaRnEA using the given ges matrix and network list.
Usage
meta_narnea(ges.mat, net.list, sample.weights = TRUE)
Arguments
ges.mat
GES matrix (features X samples).
net.list
List of A3 networks.
sample.weights
Flag to perform weighted integration. Default of TRUE.
WARNING: Running w/ sample.weights = TRUE may be very slow for large numbers of samples.
Value
NaRnEA result list; matrices (regulators X samples) for NES and PES values.
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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| meta_narnea | R Documentation |
Runs MetaNaRnEA using the given ges matrix and network list.
Description
Runs MetaNaRnEA using the given ges matrix and network list.
Usage
meta_narnea(ges.mat, net.list, sample.weights = TRUE)
Arguments
ges.mat |
GES matrix (features X samples). |
net.list |
List of A3 networks. |
sample.weights |
Flag to perform weighted integration. Default of TRUE. WARNING: Running w/ sample.weights = TRUE may be very slow for large numbers of samples. |
Value
NaRnEA result list; matrices (regulators X samples) for NES and PES values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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