MWUMrs: Identifies cluster specific master regulators using the...
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
MWUMrs R Documentation
Identifies cluster specific master regulators using the Mann-Whitney U-test.
Approximates p-vals using a normal distribution for n > 30.
Description
Identifies cluster specific master regulators using the Mann-Whitney U-test.
Approximates p-vals using a normal distribution for n > 30.
Usage
MWUMrs(dat.object, clust.vect)
Arguments
dat.object
Seurat object w/ PISCES assay and viper matrix in 'scale.data'.
clust.vect
Vector of cluster labels; if not specified, will use 'PISCES;misc$pisces.cluster' as the cluster labels
Value
List of log p-values for pos/neg MRs in each cluster; stored in PISCES assay under 'misc' as 'mwuMRs'
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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| MWUMrs | R Documentation |
Identifies cluster specific master regulators using the Mann-Whitney U-test. Approximates p-vals using a normal distribution for n > 30.
Description
Identifies cluster specific master regulators using the Mann-Whitney U-test. Approximates p-vals using a normal distribution for n > 30.
Usage
MWUMrs(dat.object, clust.vect)
Arguments
dat.object |
Seurat object w/ PISCES assay and viper matrix in 'scale.data'. |
clust.vect |
Vector of cluster labels; if not specified, will use 'PISCES;misc$pisces.cluster' as the cluster labels |
Value
List of log p-values for pos/neg MRs in each cluster; stored in PISCES assay under 'misc' as 'mwuMRs'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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