get_mr_set: Returns set of candidate master regulators or markers from...

In califano-lab/PISCES: Protein Activity Inferecne in Single Cells

Returns set of candidate master regulators or markers from the given mr.list object.

Description

Returns set of candidate master regulators or markers from the given mr.list object.

Usage

get_mr_set(
  mr.list,
  num.mrs = 10,
  reg.class = c("regulator", "marker"),
  reg.sign = c("pos", "neg")
)

Arguments

mr.list	MR List, such as that generated by 'stouffer_cluster_mrs' or 'kappa_cluster_mrs'.
num.mrs	Number of MRs to return for each cluster. Defualt of 10.
reg.class	Class of proteins to return. One of ‘c(’regulator', 'marker')', with 'regulator' as default.
reg.sign	Sign of proteins to return. One of ‘c(’pos', 'neg')', with 'pos' as default.

Value

A dataframe with proteins and assocaited clusters.

califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.