make_metacells: Generates meta cells for each cluster

In califano-lab/PISCES: Protein Activity Inferecne in Single Cells

Generates meta cells for each cluster

Description

Generates meta cells for each cluster

Usage

make_metacells(
  counts.mat,
  dist.mat,
  clust.vec,
  num.neighbors = 5,
  subset = 250,
  min.samps = 500
)

Arguments

counts.mat	Matrix of filtered counts (genes X samples).
dist.mat	Distance matrix for this data.
clust.vec	Clustering vector. If not specified, entire matrix will be used.
num.neighbors	Number of neighbors to use in metacells. Default of 5.
subset	Number of cells to subset to. Default of 250. No subsetting if set equal to NULL.
min.samps	Minimum number of samples in a cluster required for meta cells. Default of 500.

Value

A list of meta cell matrices for all clusters with enough samples.

califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.