Files in nathansam/CircadianTools

Collection of Tools for Detecting Rhythmic Genes

CODE_OF_CONDUCT.md R/CircadianTools.R R/DendogramPlot.R R/blast.R R/cluster_functions.R R/cluster_param_selection.R R/correlation_functions.R R/cosinor_functions.R R/custom_cosinor.R R/custom_dist.R R/cytoscape_functions.R R/data.R R/distance_gen.R R/filter_functions.R R/jaccard.R R/loading_gen.R R/mdplot.R R/rain_functions.R R/simple_plot_functions.R R/turning_plot.R R/utility_functions.R README.md man/AbsCorDist.Rd man/ActivitySelect.Rd man/AgglomClustering.Rd man/AgglomParamSelection.Rd man/AnovaFilter.Rd man/BasicPlot.Rd man/CircadianTools.Rd man/ClusterCenterGenerator.Rd man/ClusterCorDatasetPlot.Rd man/ClusterCorPlot.Rd man/ClusterDatasetPlot.Rd man/ClusterParamSelection.Rd man/ClusterPlot.Rd man/ClusterSpread.Rd man/ClusterText.Rd man/ClusterTimeProfile.Rd man/CombiFilter.Rd man/CommonSingletonFinder.Rd man/CompPlot.Rd man/ContigGen.Rd man/CorAnalysis.Rd man/CorAnalysisCluster.Rd man/CorAnalysisClusterDataset.Rd man/CorAnalysisDataset.Rd man/CorAnalysisPar.Rd man/CorSignificantPlot.Rd man/CosinorAnalysis.Rd man/CosinorAnalysisPar.Rd man/CosinorPlot.Rd man/CosinorResidualDatasetPlot.Rd man/CosinorResidualPlot.Rd man/CosinorSignificantPlot.Rd man/CytoscapeFile.Rd man/CytoscapeFilter.Rd man/DatasetDendogram.Rd man/DatasetPlot.Rd man/DendogramDatasetPlot.Rd man/DendogramPlot.Rd man/DianaClustering.Rd man/DianaParamSelection.Rd man/DistanceGen.Rd man/FastaSub.Rd man/FileConflict.Rd man/FindClusterDistanceQuantiles.Rd man/FindClusterMedian.Rd man/FindClusterQuantile.Rd man/GeneClean.Rd man/GeneRange.Rd man/GeneScale.Rd man/GeneSub.Rd man/Jaccard.Rd man/Laurasmappings.Rd man/MDSPlot.Rd man/MakeTimevector.Rd man/MedList.Rd man/MedListPar.Rd man/MedListSeq.Rd man/MultiCosinorTest.Rd man/PamClustering.Rd man/PamParamSelection.Rd man/QuantilePlots.Rd man/RainAnalysis.Rd man/RainSignificantPlot.Rd man/SingletonNameFinder.Rd man/SizeFilter.Rd man/TAnalysis.Rd man/TFilter.Rd man/TurningPlot.Rd man/ZeroFilter.Rd man/ggplot.cosinor.lm.Rd tests/testthat.R tests/testthat/test-cosinor.R