Files in noriakis/wcGeneSummary

visualization and interpretation of textual information from omics summary data through network analysis

R/alliance.R R/biotextgraph.R R/bugsigdb.R R/compareWordNet.R R/enzyme.R R/exportWCNetwork.R R/external.R R/geom_sc_wordcloud.R R/getWordsOnDendro.R R/manual.R R/pathviewText.R R/pubmed.R R/refseq.R R/sc.R R/steps.R R/textORA.R R/useUdpipe.R R/utils.R README.md man/DimPlotWithTexts.Rd man/TextMarkers.Rd man/TextMarkersScran.Rd man/biotextgraph.Rd man/changeLayout.Rd man/compareWordNet.Rd man/connectGenes.Rd man/convertMetaCyc.Rd man/enzyme.Rd man/exportCyjs.Rd man/exportCyjsWithoutImage.Rd man/exportVisjs.Rd man/exportWCNetwork.Rd man/findTerm.Rd man/generalf.Rd man/geom_node_shadowtext.Rd man/geom_sc_wordcloud.Rd man/getSlot-biotext-method.Rd man/getSlot.Rd man/getUPtax.Rd man/getWordsOnDendro.Rd man/ggplot_add.geom_sc_wordcloud.Rd man/graph_cluster.Rd man/makeBar.Rd man/makeCorpus.Rd man/make_TDM.Rd man/make_corpus.Rd man/make_graph.Rd man/obtainMarkersWC.Rd man/obtainMarkersWCScran.Rd man/obtainTextPosition.Rd man/obtain_alliance.Rd man/obtain_bugsigdb.Rd man/obtain_enrich.Rd man/obtain_enzyme.Rd man/obtain_manual.Rd man/obtain_pubmed.Rd man/obtain_refseq.Rd man/parseMetaCycPathway.Rd man/perform_ora.Rd man/plotDynamic.Rd man/plotEigengeneNetworksWithWords.Rd man/plotORA.Rd man/plotReducedDimWithTexts.Rd man/plot_biofabric.Rd man/plot_biotextgraph.Rd man/plot_wordcloud.Rd man/plotnet.Rd man/plotwc.Rd man/process_network_gene.Rd man/process_network_manual.Rd man/process_network_microbe.Rd man/refseqDESeq2.Rd man/refseqWGCNA.Rd man/returnExample.Rd man/returnP.Rd man/returnPyramid.Rd man/returnQuanteda.Rd man/returnSim.Rd man/set_filter_words.Rd man/tag_words.Rd man/textORA.Rd tests/testthat.R tests/testthat/test-basic.R vignettes/basic_usage_of_biotextgraph.Rmd