Man pages for noriakis/wcGeneSummary
visualization and interpretation of textual information from omics summary data through network analysis
| biotextgraph | biotextgraph |
| changeLayout | changeLayout |
| compareWordNet | compareWordNet |
| connectGenes | connectGenes |
| convertMetaCyc | convertMetaCyc |
| DimPlotWithTexts | DimPlotWithTexts |
| enzyme | enzyme |
| exportCyjs | exportCyjs |
| exportCyjsWithoutImage | exportCyjsWithoutImage |
| exportVisjs | exportVisjs |
| exportWCNetwork | exportWCNetwork |
| findTerm | findTerm |
| generalf | refseq, alliance, pubmed, manual, bugsigdb |
| geom_node_shadowtext | geom_node_shadowtext |
| geom_sc_wordcloud | geom_sc_wordcloud |
| getSlot | getSlot |
| getSlot-biotext-method | getSlot |
| getUPtax | getUPtax |
| getWordsOnDendro | getWordsOnDendro |
| ggplot_add.geom_sc_wordcloud | ggplot_add.geom_sc_wordcloud |
| graph_cluster | graph_cluster |
| makeBar | makeBar |
| make_corpus | make_corpus |
| makeCorpus | makeCorpus |
| make_graph | make_graph |
| make_TDM | make_TDM |
| obtain_alliance | obtain_alliance |
| obtain_bugsigdb | obtain_bugsigdb |
| obtain_enrich | obtain_enrich |
| obtain_enzyme | obtain_enzyme |
| obtain_manual | obtain_manual |
| obtainMarkersWC | obtainMarkersWC |
| obtainMarkersWCScran | obtainMarkersWCScran |
| obtain_pubmed | obtain_pubmed |
| obtain_refseq | obtain_refseq |
| obtainTextPosition | obtainTextPosition |
| parseMetaCycPathway | parseMetaCycPathway |
| perform_ora | perform_ora |
| plot_biofabric | plot_biofabric |
| plot_biotextgraph | plot_biotextgraph |
| plotDynamic | plotDynamic |
| plotEigengeneNetworksWithWords | plotEigengeneNetworksWithWords |
| plotnet | plotNet |
| plotORA | plotORA |
| plotReducedDimWithTexts | plotReducedDimWithTexts |
| plotwc | plotWC |
| plot_wordcloud | plot_wordcloud |
| process_network_gene | process_network_gene |
| process_network_manual | process_network_manual |
| process_network_microbe | process_network_microbe |
| refseqDESeq2 | refseqDESeq2 |
| refseqWGCNA | refseqWGCNA |
| returnExample | returnExample |
| returnP | returnP |
| returnPyramid | returnPyramid |
| returnQuanteda | returnQuanteda |
| returnSim | returnSim |
| set_filter_words | set_filter_words |
| tag_words | tag_words |
| TextMarkers | TextMarkers |
| TextMarkersScran | TextMarkersScran |
| textORA | textORA |
