API for raim/segmenTools
Tools for Functional Genome Exploration

Global functions
add_alphas	Man page Source code
alignData	Man page Source code
alignData_relative	Source code
annotateQuery	Source code
annotateTarget	Man page Source code
annotationOverlap	Man page Source code
arno	Man page
ash	Man page Source code
bc	Source code
bcdft	Source code
bed2coor	Man page Source code
calculatePhase	Man page Source code
ci95	Man page Source code
circ.dens	Man page Source code
clusterAnnotation	Man page Source code
clusterAverages	Man page Source code
clusterCluster	Man page Source code
clusterColors	Man page Source code
clusterFlow	Man page
clusterProfile	Man page Source code
clusterTimeseries2	Man page Source code
col2alpha	Man page
collapsePositions	Man page
collectOvlStats	Man page Source code
complex2degree	Man page Source code
coor2bed	Man page Source code
coor2index	Man page Source code
degree2complex	Man page Source code
dense2d	Man page
expandCircularFeatures	Man page Source code
fft_window	Source code
figlabel	Man page Source code
fillGenome	Man page
findAACodon	Man page Source code
getChrSum	Man page Source code
getOverlapStats	Man page
getSegmentClassTable	Man page Source code
getSegmentClasses	Man page Source code
get_fft	Man page Source code
gff2tab	Man page Source code
idx2chr	Man page Source code
idx2coor	Man page Source code
idx2str	Man page Source code
image_cls	Source code
image_matrix	Man page Source code
index2coor	Man page Source code
insertRow	Source code
insertRows	Man page Source code
jrplot	Man page Source code
lg2r	Man page Source code
list2df	Man page Source code
log_1	Man page Source code
logaxis	Man page
ma	Man page Source code
meanzero	Man page Source code
mergeCluster	Man page Source code
mutatePositions	Man page Source code
normalize.los	Man page Source code
num2col	Man page Source code
orientation	Source code
parseAnnotation	Man page Source code
parseAnnotationList	Man page Source code
parseGEOSoft	Man page Source code
parseJaccard	Man page
phaseDist	Man page
phasesortClusters	Source code
plot.clusteraverages	Man page Source code
plotBIC	Man page Source code
plotClusterLegend	Man page Source code
plotClusters	Man page Source code
plotCor	Man page Source code
plotDFT	Man page Source code
plotOverlaps	Man page Source code
plotOverlapsLegend	Man page Source code
plotSingles	Man page Source code
plot_cdfLst	Man page Source code
plotdev	Man page Source code
presegment	Man page
pvalDist	Man page
randomSegments	Man page
range2nt	Man page Source code
reCluster	Man page Source code
readDist	Man page
readFASTA	Man page
readGFF	Source code
relabelClusters	Man page Source code
removeCircularFeatures	Man page Source code
revcomp	Man page Source code
runGost	Man page Source code
segmenTools	Man page
segmentAnnotate	Man page
segmentAverage	Man page
segmentMerge	Man page
segmentOverlaps	Man page
segmentOverlaps_bed	Man page
segmentPairs	Source code
segmentPrune	Man page
segmentSort	Man page
segmentUpstream	Man page
selectColors	Man page Source code
selected	Man page Source code
seq2nt	Man page Source code
shadowtext	Man page Source code
sortOverlaps	Man page Source code
splitsegs	Man page
summarizeGEOSoft	Man page Source code
switchStrand	Man page Source code
t.clusterOverlaps	Man page Source code
tab2gff	Man page Source code
tagDuplicates	Man page Source code
testPhase	Man page Source code
testbc	Source code
testbcdft	Source code
val2col	Man page Source code
w.test	Man page Source code
whichSegment	Man page Source code
writeSegments	Man page