API for sqjin/CellChat
Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data
| Global functions | |
|---|---|
| .computeExprGroup_complex | Source code |
| .computeExprGroup_coreceptor | Source code |
| .error_if_no_Seurat | Source code |
| .get_color | Source code |
| .restrict_in | Source code |
| AnyMatrix-class | Man page |
| CellChat | Man page |
| CellChat-class | Man page |
| CellChatDB.human | Man page |
| CellChatDB.mouse | Man page |
| CellChatDB.zebrafish | Man page |
| CellChat_theme_opts | Man page Source code |
| ComputeSNN | Source code |
| PPI.human | Man page |
| PPI.mouse | Man page |
| StackedVlnPlot | Man page Source code |
| addMeta | Man page Source code |
| aggregateNet | Man page Source code |
| alpha_centrality | Man page Source code |
| barPlot | Man page Source code |
| barplot_internal | Man page Source code |
| buildSNN | Man page Source code |
| checkGeneSymbol | Man page Source code |
| colorRamp3 | Man page Source code |
| compareInteractions | Man page Source code |
| computeAveExpr | Man page Source code |
| computeCentralityLocal | Man page Source code |
| computeCommunProb | Man page Source code |
| computeCommunProbPathway | Man page Source code |
| computeEigengap | Man page Source code |
| computeEnrichmentScore | Man page Source code |
| computeExprGroup_agonist | Man page Source code |
| computeExprGroup_antagonist | Man page Source code |
| computeExpr_LR | Man page Source code |
| computeExpr_agonist | Man page Source code |
| computeExpr_antagonist | Man page Source code |
| computeExpr_complex | Man page Source code |
| computeExpr_coreceptor | Man page Source code |
| computeLaplacian | Man page Source code |
| computeNetD_structure | Man page Source code |
| computeNetSimilarity | Man page Source code |
| computeNetSimilarityPairwise | Man page Source code |
| computeRegionDistance | Man page Source code |
| createCellChat | Man page Source code |
| dotPlot | Man page Source code |
| entropia | Man page Source code |
| extractEnrichedLR | Man page Source code |
| extractEnrichedLR_internal | Man page Source code |
| extractGene | Man page Source code |
| extractGeneSubset | Man page Source code |
| extractGeneSubsetFromPair | Man page Source code |
| extract_max | Man page Source code |
| filterCommunication | Man page Source code |
| geometricMean | Man page Source code |
| getMaxWeight | Man page Source code |
| ggPalette | Man page Source code |
| identifyCommunicationPatterns | Man page Source code |
| identifyEnrichedInteractions | Man page Source code |
| identifyOverExpressedGenes | Man page Source code |
| identifyOverExpressedInteractions | Man page Source code |
| identifyOverExpressedLigandReceptor | Man page Source code |
| l1NormalizeColumns | Man page Source code |
| l1NormalizeRows | Man page Source code |
| liftCellChat | Man page Source code |
| mergeCellChat | Man page Source code |
| mergeInteractions | Man page Source code |
| modify_vlnplot | Man page Source code |
| mycircle | Man page Source code |
| netAnalysis_computeCentrality | Man page Source code |
| netAnalysis_contribution | Man page Source code |
| netAnalysis_diff_signalingRole_scatter | Man page Source code |
| netAnalysis_dot | Man page Source code |
| netAnalysis_river | Man page Source code |
| netAnalysis_signalingChanges_scatter | Man page Source code |
| netAnalysis_signalingRole_heatmap | Man page Source code |
| netAnalysis_signalingRole_network | Man page Source code |
| netAnalysis_signalingRole_scatter | Man page Source code |
| netClustering | Man page Source code |
| netEmbedding | Man page Source code |
| netMappingDEG | Man page Source code |
| netVisual | Man page Source code |
| netVisual_aggregate | Man page Source code |
| netVisual_barplot | Man page Source code |
| netVisual_bubble | Man page Source code |
| netVisual_chord_cell | Man page Source code |
| netVisual_chord_cell_internal | Man page Source code |
| netVisual_chord_gene | Man page Source code |
| netVisual_circle | Man page Source code |
| netVisual_diffInteraction | Man page Source code |
| netVisual_embedding | Man page Source code |
| netVisual_embeddingPairwise | Man page Source code |
| netVisual_embeddingPairwiseZoomIn | Man page Source code |
| netVisual_embeddingZoomIn | Man page Source code |
| netVisual_heatmap | Man page Source code |
| netVisual_hierarchy1 | Man page Source code |
| netVisual_hierarchy2 | Man page Source code |
| netVisual_individual | Man page Source code |
| netVisual_spatial | Man page Source code |
| nnd | Man page Source code |
| node_distance | Man page Source code |
| normalizeData | Man page Source code |
| pieChart | Man page Source code |
| plotGeneExpression | Man page Source code |
| projectAndRecombine | Man page Source code |
| projectData | Man page Source code |
| projectFromNetworkRecombine | Man page Source code |
| projectOnNetwork | Man page Source code |
| randomWalkBySolve | Man page Source code |
| rankNet | Man page Source code |
| rankNetPairwise | Man page Source code |
| rankSimilarity | Man page Source code |
| runPCA | Man page Source code |
| runUMAP | Man page Source code |
| scPalette | Man page Source code |
| scaleData | Man page Source code |
| scaleMat | Man page Source code |
| searchPair | Man page Source code |
| selectK | Man page Source code |
| setIdent | Man page Source code |
| show,CellChat-method | Man page |
| showDatabaseCategory | Man page Source code |
| sketchData | Man page Source code |
| spatialDimPlot | Man page Source code |
| spatialFeaturePlot | Man page Source code |
| subsetCellChat | Man page Source code |
| subsetCommunication | Man page Source code |
| subsetCommunication_internal | Man page Source code |
| subsetDB | Man page Source code |
| subsetData | Man page Source code |
| thresholdedMean | Man page Source code |
| triMean | Man page Source code |
| updateCellChat | Man page Source code |
| updateClusterLabels | Man page Source code |
