readIDATpair: Import a pair of IDATs from one sample
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays

The function takes a prefix string that are shared with _Grn.idat and _Red.idat. The function returns a SigSet.

readIDATpair(
  prefix.path,
  platform = "",
  manifest = NULL,
  controls = NULL,
  verbose = FALSE
)

`prefix.path`	sample prefix without _Grn.idat and _Red.idat
`platform`	EPIC, HM450 and HM27 etc.
`manifest`	optional design manifest file
`controls`	optional control probe manifest file
`verbose`	be verbose? (FALSE)

a SigSet

1 2	sset <- readIDATpair(sub('_Grn.idat','',system.file( "extdata", "4207113116_A_Grn.idat", package = "sesameData")))

sesame documentation built on Nov. 15, 2020, 2:08 a.m.

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Description