Biocview "ExperimentData"

10x And SmartSeq2 Data From The Tabula Muris Consortium

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages.

A k-tables approach to integrate multiple Omics-Data

Analysis of tissue-dependent exon usage in humans

An ExperimentHub package for accessing processed RLSuite data sets

ARACNe-inferred gene networks from TCGA tumor datasets

Bin annotation mm10

Brain Data from Allen Institute Brain Atlas

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Cancer Dependency Map Data Package

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

ChIC package data

Collection of Bulk RNA-Seq Experiments With Many Replicates

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

Collection Of Human And Mouse TF Regulons

Collection of publicly available imaging mass cytometry (IMC) datasets

Collection of Public Single-Cell RNA-Seq Datasets

Collection of spatially resolved omics datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Copy Neutral Illumina Methylation Arrays

Curated Prostate Cancer Data

Data accompanying qPLEXanalyzer package

Data accompanying the DAPAR and Prostar packages

Data accompanying the pRoloc package

Data accompanying the RIC package

Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Data for Combination Connectivity Mapping (ccmap) Package

Data for NxtIRF

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)

Data for screening-network Cox methods for survival analysis

Data for TCGAbiolinks package

Data for TCGA Workflow

Data for the EpiMix package

Data for the Harman package

Data for the VariantTools tutorial

Data Package for Biscuiteer

Data package for JASPAR 2016

Data Package For Moma Vignette

Data package for phylogenetic profile analysis using PhyloProfile tool

data package for xcore

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Datasets and test data files for the plotgardener package

Datasets for benchmarking in microbiome research

Datasets for signatureSearch package

Datasets for the nullranges package

Data supporting the SingleMoleculeFootprinting pkg

Download datasets from EMBL-EBI Expression Atlas

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Example ChIA-PET Datasets for the diffloop Package

Example data for the `arkas` package

Example data for the `artemis` package

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Example data for the RNAmodR package

Example data for the `sleuth` package

Example Files for the topdownr R Package

Example GC-MS data for TargetSearch Package

Example metadata for the "restfulSE" R package

Example of 1D NMR spectra data for ASICS package

Experimental Data Package for plethy

Experimental dataset from the rat BodyMap project

Experiment Hub based microbiome datasets

Exploring, analyzing and visualizing functions utilizing the pcxnData package

Exposures, Gene Expression and Methylation data for ilustration purpouses

FIA-HRMS plasma dataset

Gene Expression Datasets for the 'MM2S' Package

Gene network modeling via TopNet reveals functional dependencies between diverse tumor-critical mediator genes

Gene set collections for the GIGSEA package

GEO accession data GSE62944 as a SummarizedExperiment

GEO accession data GSE71585 as a SingleCellExperiment

HiTIMED

IDentifying Optimal DNA methylation Libraries (IDOL)

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina EPIC data on BeadSorted child saliva cells

Illumina EPIC data on extended immunomagnetic sorted blood populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

Index of Reference Cell Type Datasets

Integrating Multi-modal Single Cell Experiment datasets

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Linear Model decomposition for Designed Multivariate Experiments

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi

Metabolite-set data collection for pathway analysis in metabolomics

Metabolomics data sets to demonstrate functionality of the qcrms package

MIGSA vignette data

miRNA Affinity models for the scanMiR package

Mouse nanotube CAGE data

Multi-sample multi-group scRNA-seq data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Omics-Based Interaction Framework

Open Cancer TherApeutic Discovery (OCTAD) database

Pathway correlation coefficients and p values between pre-defined gene sets

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

PBMC data from 10X Genomics

Position and normalized expression of Fantom's enhancers

Position and normalized expression of Fantom's TSS

Pre-computed model matrices used by recountNNLS for tx abundance estimate

Pre-processed data for use with the CellMapper package

Pre-trained random forest models obtained using preciseTAD

Processed BigWigs from BrainSpan for examples

Processed Hi-C from a variety of pre-processing platforms

Prostate Cancer Data

Provide programmatic access to the tonsil cell atlas datasets

provides database to the AnimalGene2QTL package (Title Case)

Provides FACS Sorted Blood Cell Type DNA Methylation Reference Data to Estimate Blood Cellular Composition

PTR-TOF-MS volatolomics raw datasets from exhaled air and cell culture headspace

QDNAseq bin annotation for hg19

QDNAseq bin annotation for hg38

Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers

Reference data for GenomicDistributions package

Reproduce figures and simulations of OPWeight

Reproduce figures in IHW paper

Retrieves data from IMPC database

RGMQLlib, java libraries to run GMQL scala API

RNASeqRData: sample data for RNASeqR software package demonstration

RNA-Seq Tutorial

SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement

Selected Single Cell RNA-seq datasets - due to Deng et al (2014), Jaitin et al (2014) and Zeisel et al (2015)

Single cell dataset from 10x in BUS format

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-Cell Proteomics Data Package

Single-Cell Spatial Data

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Somatic Cancer Alterations

SQANTI Explorer

Strand-seq data for demonstration purposes

SuperCurve RPPA Sample Data

Supporting Data for SeSAMe Package

Supporting Data for the MTseeker Package

Supporting datasets for SBGNview package

Synthetic Expression Data for Gene Regulatory Network Inference

Tau Scores For Human Kinases

Test dataset for RMassBank

Test datasets for the MACSr package

Test Files for Single-Cell Droplet Utilities

The ewceData package provides reference data required for ewce

The package contains examples of single cell data used in vignettes and examples of the scTHI package; data contain both tumor cells and immune cells from public dataset of glioma

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

TWGBS and RNA-seq data from tissue T regulatory cells from mice

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

VirtUaL ChIP-Seq data Analysis using Networks, dummy dataset

waveTiling Example Data

Biocview "ExperimentData"

R Package Documentation

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