Files in OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink

MD5

NAMESPACE

DESCRIPTION

R/sysdata.rda

R/olink_normalization_utils.R R/olink_qc_plot.R R/npxCheck.R R/utils-pipe.R R/olink_normalization.R R/Olink_wilcox.R R/read_npx_parquet.R R/olink_Pathway_Heatmap.R R/Olink_one_non_parametric.R R/dist_plot.R R/data.R R/linear_mixed_model.R R/olink_normalization_n.R R/Olink_anova.R R/Olink_ordinalRegression.R R/Olink_boxplot.R R/Olink_theme.R R/Olink_bridgeselector.R R/Olink_ttest.R R/olink_lod.R R/olink_normalization_product.R R/Volcano_plot.R R/olink_Pathway_Enrichment.R R/Olink_color.R R/Read_NPX_data.R R/Olink_heatmap.R R/olink_Pathway_Visualization.R R/umap_plot.R R/olink_outlier_detection_utils.R R/globals.R R/npxProcessing.R R/pca_plot.R R/read_npx_zip.R R/print_and_capture.R R/read_flex.R R/Olink_plate_randomizer.R R/read_npx_csv.R inst/doc/plate_randomizer.R inst/doc/LOD.R

inst/doc/bridging_introduction.html

inst/doc/bridging_introduction.Rmd inst/doc/OutlierExclusion.Rmd inst/doc/bridging_E3072toEHT.R inst/doc/plate_randomizer.Rmd inst/doc/Vignett.R inst/doc/bridging_E3072toEHT.Rmd inst/doc/bridging_introduction.R inst/doc/OutlierExclusion.R inst/doc/Vignett.Rmd inst/doc/LOD.Rmd

inst/doc/OutlierExclusion.html

inst/doc/Vignett.html

inst/doc/LOD.html

inst/doc/bridging_E3072toEHT.html

inst/doc/plate_randomizer.html

inst/extdata/Example_NPX_Data_empty.zip

inst/extdata/npx_data1.xlsx

inst/extdata/Example_NPX_Data_zip.zip

inst/extdata/Example_NPX_Data.csv

inst/extdata/Example_NPX_Data_sha256.zip

inst/extdata/Example_NPX_Data_3K.zip

inst/extdata/npx_data_ext.parquet

inst/extdata/npx_data1_meta.csv

inst/extdata/OlinkIDMapping.rds

inst/extdata/npx_data_v3.zip

inst/extdata/npx_data_ext_v1.zip

inst/extdata/npx_data_ext_v2.zip

inst/extdata/Example_NPX_Data2_1.csv

inst/extdata/complex_dataset.rds

build/vignette.rds

tests/testthat.R tests/data/refResults.R

tests/data/npx_data_format221121.RData

tests/data/example_3k_data.R tests/data/ref_results_norm.R tests/data/example_HT_data.R

tests/data/npx_data_format221010.RData

tests/data/refResults.RData

tests/testthat/_snaps/Volcano_plot/volcano-plot.svg

tests/testthat/_snaps/Volcano_plot/volcano-plot-with-coloroption.svg

tests/testthat/_snaps/olink_qc_plot/qc-plot-with-coloroption.svg

tests/testthat/_snaps/olink_qc_plot/qc-plot.svg

tests/testthat/_snaps/Olink_plate_randomizer/randomized-data.svg

tests/testthat/_snaps/Olink_boxplot/boxplot-time.svg

tests/testthat/_snaps/Olink_boxplot/boxplot-site-2prots.svg

tests/testthat/_snaps/Olink_boxplot/boxplot-time-and-site.svg

tests/testthat/_snaps/Olink_boxplot/boxplot-site-10prots.svg

tests/testthat/_snaps/Olink_boxplot/boxplot-time-with-coloroption.svg

tests/testthat/_snaps/dist_plot/distribution-plot-col-by-treatment.svg

tests/testthat/_snaps/dist_plot/distribution-plot.svg

tests/testthat/_snaps/olink_Pathway_Heatmap/ora-heatmap-with-keyword.svg

tests/testthat/_snaps/olink_Pathway_Heatmap/gsea-heatmap.svg

tests/testthat/_snaps/olink_Pathway_Visualization/ora-vis-with-terms.svg

tests/testthat/_snaps/olink_Pathway_Visualization/ora-vis-with-keyword.svg

tests/testthat/_snaps/olink_Pathway_Visualization/gsea-vis-with-keyword.svg

tests/testthat/_snaps/olink_Pathway_Visualization/gsea-visualization.svg

tests/testthat/_snaps/linear_mixed_model/lmer-plot.svg

tests/testthat/_snaps/linear_mixed_model/lmer-plot-more-prots-than-space.svg

tests/testthat/refs/mock_sampleID_hashes.csv

tests/testthat/refs/Flex_test_data_long_quant.xlsx

vignettes/bridging_introduction.Rmd vignettes/OutlierExclusion.Rmd vignettes/plate_randomizer.Rmd vignettes/bridging_E3072toEHT.Rmd vignettes/Vignett.Rmd vignettes/LOD.Rmd

data/manifest.rda

data/npx_data2.rda

data/npx_data1.rda

man/figures/PCA_btw_product_before.png

man/figures/bridges_pre_bridging.png

man/figures/PCA_Panel.png

man/figures/bridging_results.rds

man/figures/PCA_Outlier_Fig1.png

man/figures/sample_med_boxplot.png

man/figures/PCA_Treatment.png

man/figures/label_samples_pca.png

man/figures/dist_boxplot.png

man/figures/qc_site_plot.png

man/figures/qc_label_plot.png

man/figures/Bridging_schematic.png

man/figures/small_logo.png

man/figures/outlier_line_pca.png

man/figures/overlapping_samples_table.rds

man/figures/SCs_post_bridging.png

man/figures/bridges_post_bridging.png

man/figures/qc_plot.png

man/figures/site_boxplot.png

man/figures/SCs_pre_bridging.png

man/figures/Outlier_PCA.png

man/figures/logo.html

man/figures/assay_bridgeability.jpg

OlinkAnalyze documentation built on Sept. 25, 2024, 9:07 a.m.

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OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink

Files in OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink

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OlinkAnalyze Facilitate Analysis of Proteomic Data from Olink

Files in OlinkAnalyze Facilitate Analysis of Proteomic Data from Olink

R Package Documentation

Browse R Packages

We want your feedback!

OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink

Files in OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink