API for nimble
MCMC, Particle Filtering, and Programmable Hierarchical Modeling

Global functions
.onAttach	Source code
AD	Man page
ADNimbleList	Man page
ADbreak	Man page Source code
ADproxyModelClass	Man page
ADproxyModelClass-class	Man page
AF_slice	Man page
AGHQ	Man page
AGHQuad	Man page
AGHQuad_params	Man page
AGHQuad_summary	Man page
BUGScontextClass-Class	Man page
BUGSdeclClass	Man page
BUGSdeclClass-class	Man page
BUGSdistToRdist	Source code
BUGSmodel	Source code
BUGSsingleContextClass-Class	Man page
CAR-Normal	Man page
CAR-Proper	Man page
CAR_calcC	Man page
CAR_calcCmatrix	Man page
CAR_calcEVs2	Man page
CAR_calcEVs3	Man page
CAR_calcM	Man page
CAR_calcNumIslands	Man page
CAR_calcSubsetIndList	Source code
CAR_checkConjugacy	Source code
CAR_convertNeighborWeightLists	Source code
CAR_convertWeightMatrix	Source code
CAR_normal_checkAdjWeightsNum	Source code
CAR_normal_checkNeighborIndWeightLists	Source code
CAR_normal_processParams	Source code
CAR_proper_checkAdjNumCM	Source code
CAR_proper_checkNeighborIndList	Source code
CAR_proper_processParams	Source code
CRP	Man page
CRP_concentration	Man page
Categorical	Man page
ChineseRestaurantProcess	Man page
Cmatrix2mvOneVar	Source code
CmodelBaseClass	Man page
CmodelBaseClass-class	Man page
CmultiNimbleFunctionClass-Class	Man page
CmultiNimbleListClass-Class	Man page
CmultiNimbleObjClass-Class	Man page
CnimbleFunctionBase	Man page
CnimbleFunctionBase-class	Man page
Constraint	Man page
DPmeasure	Man page
Dirichlet	Man page
Double-Exponential	Man page
EigenNewExpr	Source code
Exponential	Man page
Interval	Man page
Inverse-Gamma	Man page
Inverse-Wishart	Man page
LKJ	Man page
Laplace	Man page
MCEM_mcse	Man page Source code
MCMCconf	Man page
MCMCconf-class	Man page
MSElossFunction	Source code
MakeCustomModelClass	Source code
MakeCustomModelClass-Class	Man page
Multinomial	Man page
Multivariate-t	Man page
MultivariateNormal	Man page
R6Class-Class	Man page
RCfunInfoClass-Class	Man page
RCfunction	Source code
RCfunctionCompileClass-Class	Man page
RJ_fixed_prior	Man page
RJ_indicator	Man page
RJ_toggled	Man page
RMakeCustomModelClass	Source code
RMakeCustomModelClass-Class	Man page
RW	Man page
RW_PF	Man page
RW_PF_block	Man page
RW_block	Man page
RW_block_lkj_corr_cholesky	Man page
RW_dirichlet	Man page
RW_lkj_corr_cholesky	Man page
RW_llFunction	Man page
RW_llFunction_block	Man page
RW_multinomial	Man page
RW_wishart	Man page
Rmatrix2mvOneVar	Man page Source code
RmodelBaseClass	Man page
RmodelBaseClass-class	Man page
Rname2CppName	Source code
RparseTree2ExprClasses	Source code
S3Class-Class	Man page
StickBreakingFunction	Man page
WAIC	Man page
Wishart	Man page
[,CmodelValues-method	Man page
[,CmodelValues-method,ANY,ANY	Man page
[,CmodelValues-method,character,missing	Man page
[,CmodelValues-method,character,missing,ANY-method	Man page
[,distributionsClass-method	Man page
[,modelValuesBaseClass-method	Man page
[,numberedModelValuesAccessors-method	Man page
[,numberedObjects-method	Man page
[<-,CmodelValues-method	Man page
[<-,modelValuesBaseClass-method	Man page
[<-,numberedModelValuesAccessors-method	Man page
[<-,numberedObjects-method	Man page
[[,CNumericList-method	Man page
[[,CmodelValues-method	Man page
[[,RNumericList-method	Man page
[[,conjugacyRelationshipsClass-method	Man page
[[,distributionsClass-method	Man page
[[,modelBaseClass-method	Man page
[[,nimPointerList-method	Man page
[[<-,CNumericList-method	Man page
[[<-,CmodelValues-method	Man page
[[<-,RNumericList-method	Man page
[[<-,modelBaseClass-method	Man page
[[<-,nimPointerList-method	Man page
[[<-,nimbleFunctionList-method	Man page
]	Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
`nfVar<-`	Source code
`specialHandling<-`	Source code
`values<-`	Source code
addADinfoObjects	Source code
addArg	Source code
addBlockFromCppName	Source code
addDIB	Source code
addDefaultDistributionInfo	Source code
addDistList2matchFunctions	Source code
addDynamicallyIndexedWrapping	Source code
addIndentToList	Source code
addIndexWrapping	Source code
addMacroInits	Source code
addMissingIndexingRecurse	Source code
addModelDollarSign	Source code
addMonitors	Man page
addMonitors2	Man page
addNecessaryIndexingFromArgumentNumbers	Source code
addNecessaryIndexingToNewNode	Source code
addNecessarySetupCode	Source code
addNewCode	Source code
addSampler	Man page
addSamplerToConf	Source code
addSetupCodeNames	Source code
addToTypeEnv	Source code
addTransposeIfNeededForNonSeqBlock	Source code
addUnknownIndexToVarName	Source code
addUnknownIndexToVarNameInBracketExpr	Source code
all	Man page
any	Man page
anyNonScalar	Source code
any_na	Man page Source code
any_nan	Man page Source code
areMVSymTabsEqual	Source code
argType2symbol	Source code
argType2symbolInternal	Source code
argTypeList2symbolTable	Source code
arithmeticOutputType	Source code
array	Man page
as.carAdjacency	Man page Source code
as.carCM	Man page Source code
as.list.CmodelValues	Source code
as.list.modelValuesBaseClass	Source code
as.list.modelValuesBaseClass-Class	Man page
as.matrix.CmodelValues	Source code
as.matrix.modelValuesBaseClass	Source code
as.matrix.modelValuesBaseClass-Class	Man page
asCol	Man page Source code
asRow	Man page Source code
assignLogProbName	Source code
assignNumberedObject	Source code
assignmentTypeWarn	Source code
autoBlock	Man page Source code
autoBlockClass-Class	Man page
autoBlockParamDefaults	Source code
besselK	Man page
binary	Man page
blockIndexInfo	Source code
buildAGHQ	Man page
buildAGHQGrid	Man page
buildAuxiliaryFilter	Man page Source code
buildBootstrapFilter	Man page Source code
buildCopyLineFromSEXP	Source code
buildCopyLineToSEXP	Source code
buildEnsembleKF	Man page Source code
buildIntermNone	Source code
buildIteratedFilter2	Man page Source code
buildLaplace	Man page Source code
buildLiuWestFilter	Man page Source code
buildMCEM	Man page
buildMCMC	Man page
buildModelInterface	Source code
buildNeededObjects	Source code
buildNimbleListInterface	Source code
buildNimbleObjInterface	Source code
buildOneLaplace	Source code
buildOneLaplace1D	Source code
buildSimpleIntermCall	Source code
buildSymbolTable	Source code
buildWAIC	Man page
c	Man page
cGetNRow	Source code
calcAdaptationFactor	Man page
calcCrossVal	Source code
calcCrossValSD	Source code
calcDerivs_hessian	Source code
calcDerivs_internal	Source code
calcNodes	Man page
calcNodesMV	Man page
calc_dcatConjugacyContributions	Man page
calc_dmnormAltParams	Man page
calc_dmnormConjugacyContributions	Man page
calc_dwishAltParams	Man page
calculate	Man page Source code
calculateDiff	Man page Source code
calculateWAIC	Man page Source code
carBounds	Man page
carMaxBound	Man page
carMinBound	Man page
cat	Man page
categorical	Man page
cc_checkLinearity	Source code
cc_checkScalar	Source code
cc_checkStickbreaking	Source code
cc_combineExprsAddition	Source code
cc_combineExprsDivision	Source code
cc_combineExprsMultiplication	Source code
cc_combineExprsSubtraction	Source code
cc_createStructureExpr	Source code
cc_expandDetermNodesInExpr	Source code
cc_getNodesInExpr	Man page Source code
cc_linkCheck	Source code
cc_makeConjugateSamplerName	Source code
cc_makeRDistributionName	Source code
cc_makeSamplerTypeName	Source code
cc_negateExpr	Source code
cc_nodeInExpr	Source code
cc_otherParamsCheck	Source code
cc_replace01	Source code
cc_stripExpr	Source code
cc_vectorizedComponentCheck	Source code
character2index	Source code
checkAndPrepareDistributionInfo	Source code
checkCRPconjugacy	Source code
checkConjugacy	Man page
checkDim	Source code
checkDistributionInput	Source code
checkForDeterministicDorR	Source code
checkForDuplicateNodeDeclaration	Source code
checkInterrupt	Man page Source code
checkMacroPars	Source code
checkNimbleFunctionListCpp	Source code
checkNimbleOrRfunctionNames	Source code
checkNormalInvGammaConjugacy	Source code
checkNormalInvWishartConjugacy	Source code
checkReservedVarNames	Source code
checkUserDefinedDistribution	Source code
cleanWhite	Source code
clearCompiled	Man page Source code
clearNeededObjects	Source code
cloglog	Man page Source code
code2Name_fromArgList	Source code
codeBlockClass	Man page
codeBlockClass-class	Man page
codeProcessIfThenElse	Source code
codeProcessModelMacros	Source code
codeSubstitute	Source code
collectEdges	Source code
collectInferredVertexEdges	Source code
combineIndices2Flat	Source code
compareConjugacyLists	Source code
compileModel_impl	Source code
compileNimble	Man page Source code
configureMCMC	Man page Source code
configureRJ	Man page Source code
configureRJ_checks	Source code
conjugacyClass-Class	Man page
conjugacyRelationshipsClass-Class	Man page
convertFactorConstantsToNumeric	Source code
convertSplitVertexNamesToEvalSafeNames	Source code
convertWrtArgToIndices	Source code
copierVector	Source code
copy	Man page
copyExprClass	Source code
copyExprClass-Class	Man page
copyFromRobject	Source code
copyFromRobjectViaActiveBindings	Source code
countDllObjects	Source code
cppBUGSmodelClass-Class	Man page
cppCPPfileClass-Class	Man page
cppCodeFileClass-Class	Man page
cppDef_MV_buildVars_impl	Source code
cppDef_model_buildVar_impl	Source code
cppDouble	Source code
cppEigenMap	Source code
cppHfileClass-Class	Man page
cppInt	Source code
cppLiteral	Source code
cppMinusOne	Source code
cppModelValuesAccessorVector	Source code
cppModelValuesClass-Class	Man page
cppModelValuesMapAccessorVector	Source code
cppModelVariableAccessorVector	Source code
cppModelVariableMapAccessorVector	Source code
cppNamedObjectsClass-Class	Man page
cppNewNimbleList	Source code
cppNimArr	Source code
cppNimArrPtr	Source code
cppNimbleClassClass-Class	Man page
cppNimbleFunctionClass-Class	Man page
cppNimbleListClass-Class	Man page
cppNimbleListReturningOperator	Source code
cppNodeFunctionVector	Source code
cppOutputBinaryOrUnary	Source code
cppOutputBlank	Source code
cppOutputBracket	Source code
cppOutputCall	Source code
cppOutputCallAsIs	Source code
cppOutputCallWithName	Source code
cppOutputCast	Source code
cppOutputChainedCall	Source code
cppOutputColon	Source code
cppOutputComment	Source code
cppOutputCout	Source code
cppOutputCoutNoNewline	Source code
cppOutputDereference	Source code
cppOutputDoubleBracket	Source code
cppOutputEigBlank	Source code
cppOutputEigExternalUnaryFunction	Source code
cppOutputEigMemberFunction	Source code
cppOutputEigMemberFunctionNoTranslate	Source code
cppOutputEigMemberFunctionNoTranslate_specialAD	Source code
cppOutputEigenCast	Source code
cppOutputEigenMapAssign	Source code
cppOutputFor	Source code
cppOutputGetBound	Source code
cppOutputGetNodeFunctionIndexedInfo	Source code
cppOutputGetParam	Source code
cppOutputIfWhile	Source code
cppOutputLiteral	Source code Source code
cppOutputMakeFixedVector	Source code
cppOutputMemberData	Source code
cppOutputMemberFunction	Source code
cppOutputMemberFunctionDeref	Source code
cppOutputMemberFunctionGeneric	Source code
cppOutputMidOperator	Source code
cppOutputNFmethod	Source code
cppOutputNFvar	Source code
cppOutputNext	Source code
cppOutputNimDerivs	Source code
cppOutputNimDerivsPrependType	Source code
cppOutputNimDerivs_calculate	Source code
cppOutputNimFunListAccess	Source code
cppOutputNimSwitch	Source code
cppOutputNonNativeEigen	Source code
cppOutputNumList	Source code
cppOutputParen	Source code
cppOutputPointerDereference	Source code
cppOutputPow	Source code
cppOutputPtrType	Source code
cppOutputReturn	Source code
cppOutputSize	Source code
cppOutputSkip	Source code
cppOutputStochIndGetSet	Source code
cppOutputTemplate	Source code
cppOutputVoidPtr	Source code
cppProjectClass-Class	Man page
cppSEXP	Source code
cppStrideType	Source code
cppVarSym2templateTypeCppVarSym	Source code
cppVecNimArr	Source code
cppVecNimArrPtr	Source code
cppVecVoidPtr	Source code
cppVirtualNimbleFunctionClass-Class	Man page
cppVoid	Source code
createDFfromABlist	Source code
createDefault_isDataObj	Source code
createDynamicConjugateSamplerName	Source code
createNamedObjectsFromList	Source code
crossLevel	Man page
cube	Man page Source code
custom_optim	Source code
custom_optim_inner	Source code
dCRP	Man page
dcar_normal	Man page Source code
dcar_proper	Man page Source code
dcat	Man page Source code
dconstraint	Man page Source code
ddexp	Man page Source code
ddirch	Man page Source code
decide	Man page Source code
decideAndJump	Man page
declare	Man page Source code
declareHandler	Source code
defaultParamInfo	Source code
deparse	Source code
dependentClass-Class	Man page
deregisterDistributions	Man page Source code
derivInfo	Source code
derivs	Man page
detectDynamicIndexes	Source code
detectNimbleAliasRisk	Source code
detectNonscalarIndex	Source code
detect_nfVar_info_aliasRisk	Source code
determineContextSize	Source code
determineNdimFromOneCase	Source code
determineNdimsFromNfproc	Source code
determineNodeIndexSizes	Source code
dexp_nimble	Man page Source code
dflat	Man page Source code
dhalfflat	Man page Source code
diag	Man page
dim	Man page
dimOrLength	Source code
dinterval	Man page Source code
dinvgamma	Man page Source code
dinvwish_chol	Man page Source code
dirichlet	Man page
distClass-Class	Man page
distributionInfo	Man page
distributionsClass-Class	Man page
dlkj	Man page
dlkj_corr_cholesky	Man page Source code
dmFunHandler	Source code
dmnorm_chol	Man page Source code
dmulti	Man page Source code
dmvt_chol	Man page Source code
double	Source code
dropSingleSizes	Source code
dsqrtinvgamma	Man page Source code
dt_nonstandard	Man page Source code
dwish_chol	Man page Source code
dynamicConjugateSamplerAdd	Source code
dynamicConjugateSamplerExists	Source code
dynamicConjugateSamplerGet	Source code
dynamicConjugateSamplerWrite	Source code
eigen	Man page
eigenCast	Source code
eigenNimbleList	Man page
eigenizeArrayize	Source code
eigenizeMatricize	Source code
eigenizeName	Source code
eigenizeNameStrided	Source code
eigenize_alwaysMatrix	Source code
eigenize_asRowOrCol	Source code
eigenize_assign_before_recurse	Source code
eigenize_cWiseAddSub	Source code
eigenize_cWiseBinaryArray	Source code
eigenize_cWiseBinaryArrayLogical	Source code
eigenize_cWiseBinaryEitherMatch	Source code
eigenize_cWiseBinaryMatrix	Source code
eigenize_cWiseByScalarArray	Source code
eigenize_cWiseMultDiv	Source code
eigenize_cWiseUnaryArray	Source code
eigenize_cWiseUnaryArray_external	Source code
eigenize_cWiseUnaryEither	Source code
eigenize_cWiseUnaryMatrix	Source code
eigenize_chainedCall	Source code
eigenize_coeffSetter	Source code
eigenize_doNotRecurse	Source code
eigenize_eigenBlock	Source code
eigenize_matrixOps	Source code
eigenize_nfVar	Source code
eigenize_nimbleNullaryClass	Source code
eigenize_nimbleNullaryClass-Class	Man page
eigenize_nonSeq	Source code
eigenize_recyclingRuleFunction	Source code
eigenize_reductionArray	Source code
eigenize_reductionBinaryEither	Source code
eigenize_reductionEither	Source code
embedInRbracket	Source code
embedListInRbracket	Source code
emptyTypeInfo	Source code
enableWAIC	Man page
evalBracketArgs	Source code
evalBracketArgsKnownBracket	Source code
evalInDistsMatchCallEnv	Source code
example_fillInMissingIndices	Source code
example_getMissingDimensions	Source code
existsFunctionEnvVar	Source code
expandContextAndReplacements	Source code
expandIndexSet4sapply	Source code
expandMVNames	Source code
expandNodeNames	Man page
expit	Man page Source code
exprAsListDrop2	Source code
exprClass-Class	Man page
exprClassProcessingErrorMsg	Source code
exprClasses_addDebugMarks	Source code
exprClasses_buildInterms	Source code
exprClasses_eigenize	Source code
exprClasses_initSizes	Source code
exprClasses_insertAssertions	Source code
exprClasses_labelForEigenization	Source code
exprClasses_liftMaps	Source code
exprClasses_modifyForAD	Source code
exprClasses_processSpecificCalls	Source code
exprClasses_setSizes	Source code
exprClasses_setToEigenize	Source code
exprName2Cpp	Source code
exprTypeInfoClass-Class	Man page
extractAnyVectorizedIndexExprs	Source code
extractControlElement	Man page Source code
extractFlatIndices_wVarInfo	Source code
filenameFromSpecialHandling	Source code
findAllListElementsByName	Source code
findAllListElementsByNameInternal	Source code
findClass-Class	Man page
findClusterNodes	Source code
findMethodsInExprClass	Source code
findMethodsInExprClass-Class	Man page
find_nfVar_info	Source code
flat	Man page
gd_allNeighbors	Source code
gd_getDependencies_IDs	Source code
genIndexVarValues_recurse	Source code
genLocalMakevars	Source code
genLogProbNodeExprAndReplacements	Source code
genName2	Source code
genReplacementsAndCodeRecurse	Source code
generalFunSizeHandlerFromSymbols	Source code
generateAll	Source code
generateClassHeader	Source code
generateConditionalLines	Source code
generateFunctionHeader	Source code
generateObjectDefs	Source code
generateRandomFoldFunction	Source code
getAllDistributionsInfo	Source code
getArgumentType	Source code
getBUGSexampleDir	Man page Source code
getBoolValue	Source code
getBound	Man page Source code
getCallText	Source code
getCharacterValue	Source code
getCharacterVectorValue	Source code
getClass-Class	Man page
getCode	Man page
getConditionallyIndependentSets	Man page Source code
getConstants	Man page
getDefinition	Man page Source code
getDependencies	Man page
getDependenciesList	Man page
getDependencyPaths	Source code
getDimension	Man page Source code
getDistribution	Man page
getDistributionInfo	Man page Source code
getDistributionList	Source code
getDoubleValue	Source code
getDownstream	Man page
getFunctionEnvVar	Source code
getImmediateParentNodes	Source code
getIntValue	Source code
getLogProb	Man page Source code
getLogProbNodes	Man page
getLogProbNodesMV	Man page
getMVName	Source code
getMVptr	Source code
getMacroInits	Man page
getMacroParameters	Man page Source code
getModelValuesConf	Source code
getMonitors	Man page
getMonitors2	Man page
getNamedObjected	Source code
getNimValues	Source code
getNimbleFunctionEnvironment	Source code
getNimbleOption	Man page Source code
getNimbleProject	Man page Source code
getNimbleTypes	Source code
getNodeFunctionIndexedInfo	Man page Source code
getNodeNames	Man page
getNumberedObject	Source code
getParam	Man page Source code
getParamID	Source code
getParamNames	Man page Source code
getParametersFromCode	Source code
getParametersFromCodeInternal	Source code
getParents	Man page
getParsFromCodePiece	Source code
getRefClass-Class	Man page
getSamplerExecutionOrder	Man page
getSamplers	Man page
getSamplesDPmeasure	Man page Source code
getSamplesDPmeasureNames	Source code
getSetCharacterScalar	Source code
getSetCharacterVector	Source code
getSetDoubleScalar	Source code
getSetIntegerScalar	Source code
getSetLogicalScalar	Source code
getSetModelValues	Source code
getSetModelValuesPtr	Source code
getSetModelVarPtr	Source code
getSetNimPtrList	Source code
getSetNimbleFunction	Source code
getSetNimbleList	Source code
getSetNumericVector	Source code
getSize_NumberedObjects	Source code
getSymObj_recurse	Source code
getSymbolicParentNodes	Source code
getSymbolicParentNodesRecurse	Source code
getType	Man page Source code
getValues	Source code
getValuesAccess	Source code
getVarAndIndices	Source code
getVarNames	Man page
getWAIC	Man page
getWAICdetails	Man page
getsize	Man page Source code
halfflat	Man page
handleOutOfBounds	Source code
handleScaleAndRateForExpNimble	Source code
handleScaleAndRateForGamma	Source code
hasBracket	Source code
icloglog	Man page Source code
identityAssert	Source code
identityMatrix	Man page
ilogit	Man page Source code
indexedNodeInfoTableClass	Source code
indexedNodeInfoTableClass-Class	Man page
initializeInfo	Man page
initializeModel	Man page
inprod	Man page Source code
insertEigenTranspose	Source code
insertExprClassLayer	Source code
insertIndexingBracket	Source code
insertSingleIndexBrackets	Source code
insertSubIndexExpr	Source code
integer	Man page
integrate	Man page
inverse	Man page Source code
inverse-wishart	Man page
iprobit	Man page Source code
is.Cmodel	Man page Source code
is.Cnf	Man page Source code
is.Rmodel	Man page Source code
is.blank	Source code
is.indexed	Source code
is.model	Man page Source code
is.na	Man page
is.na.vec	Source code
is.nan	Man page
is.nan.vec	Source code
is.nf	Man page Source code
is.nfGenerator	Man page Source code
is.nl	Man page Source code
is.nlGenerator	Source code
is.rcf	Source code
is.vectorized	Source code
isBinary	Man page
isClass-Class	Man page
isCodeArgBlank	Source code
isCodeScalar	Source code
isData	Man page
isDeterm	Man page
isDiscrete	Man page Source code
isDynamicIndex	Source code
isEigScalar	Source code
isEndNode	Man page
isExprLiftable	Source code
isIntegerEquivalent	Source code
isMixedSizes	Source code
isModelValuesConf	Source code
isMultivariate	Man page
isNameInExpr	Source code
isNameInExprList	Source code
isRbracket	Source code
isSealedClass-Class	Man page
isSetupCodeGenerated	Source code
isStoch	Man page
isSymbolType	Source code
isTruncated	Man page
isUnivariate	Man page
isUserDefined	Man page Source code
isValid	Source code
isVectorIndex	Source code
isVirtualClass-Class	Man page
isXS3Class-Class	Man page
keywordInfoClass-Class	Man page
labelFunctionMetaCreator	Source code
laplace	Man page
length	Man page
length.nimPointerList	Source code
lkj	Man page
lkj_corr	Man page
lkj_corr_cholesky	Man page
logdet	Man page Source code
logfact	Man page Source code
loggam	Man page Source code
logical	Man page
logit	Man page Source code
makeADargumentTransferFunction2	Source code
makeADtapingFunction2	Source code
makeBUGSactiveBindingDef	Source code
makeBUGSclassFields	Source code
makeBoundInfo	Man page Source code
makeCalcTotalLengthBlock	Source code
makeCallList	Source code
makeCopyFromRobjectDef	Source code
makeCopyingCodeBlock	Source code
makeCustomModelValuesClass	Source code
makeCustomModelValuesClass-Class	Man page
makeDeclareSizeField	Source code
makeDefaultDirName	Source code
makeEigenArgsMatch	Source code
makeEigenBlockExprFromBrackets	Source code
makeEigenName	Source code
makeEigenTypeLabel	Source code
makeEnvName	Source code
makeFillValue	Source code
makeGetCodeFromAccessorVector	Source code
makeIndexNamePieces	Source code
makeIndexedVariable	Source code
makeLogProbEnvName	Source code
makeLogProbName	Source code
makeMapAccessExpr	Source code
makeMapExprFromBrackets	Source code
makeMapInfoFromAccessorVector	Source code
makeMapInfoFromAccessorVectorFaster	Source code
makeMapSetupCodeNames	Source code
makeModelBindingFields	Source code
makeModelCppCopyTypes	Source code
makeModelDerivsInfo	Man page Source code
makeModelDerivsInfo_impl	Source code
makeModelValuesClassFields	Source code
makeNFBindingFields	Source code
makeNameName	Source code
makeNewConfFromOldConf	Source code
makeNewNimListSEXPRESSIONFromC	Source code
makeNimbleFxnCppCopyTypes	Source code
makeNimbleFxnInterfaceCallMethodCode	Source code
makeNimbleListBindingFields	Source code
makeNimbleListTemplateWithBlankFirstArg	Source code
makeOffsetRexpr	Source code
makeOutputNodes	Source code
makeParamInfo	Man page Source code
makeReturnVector	Source code
makeRowName	Source code
makeSetCodeFromAccessorVector	Source code
makeSingleCopyCall	Source code
makeSingleIndexAccessCodeNames	Source code
makeSingleIndexAccessExpr	Source code
makeSizeAndDimList	Source code
makeSizeAndDimListForIndexedInfo	Source code
makeSizeExpressions	Source code
makeSpaces	Source code
makeSplitInfo	Source code
makeStrideRexprs	Source code
makeTypeObj_impl	Source code
makeTypeTemplateFunction	Source code
makeVecName	Source code
makeVertexNamesFromIndexArray2	Source code
make_deriv_function	Source code
mapsClass-Class	Man page
matchAndFill.call	Source code
matchKeywordCode	Source code
matchKeywordCodeMemberFun	Source code
matchKeywords_recurse	Source code
matrix	Man page
matrix2mv	Source code
mcmc_checkWAICmonitors	Source code
mcmc_checkWAICmonitors_conditional	Source code
mcmc_createModelObject	Man page Source code
mcmc_determineCalcAndCopyNodes	Source code
mcmc_generateControlListArgument	Source code
mcmc_listContentsToStr	Source code
mcmc_processMonitorNames	Source code
mergeMultiLineStatements	Source code
messageIfVerbose	Man page Source code
minMaxHandler	Source code
modelBaseClass	Man page
modelBaseClass-class	Man page
modelDefClass	Man page
modelDefClass-class	Man page
modelDefInfoClass-Class	Man page
modelInitialization	Man page
modelValues	Man page Source code
modelValuesAccessorVector	Source code
modelValuesBaseClass	Man page
modelValuesBaseClass-class	Man page
modelValuesConf	Man page Source code
modelValuesElement2Matrix	Source code
modelVariableAccessorVector	Source code
model_macro_builder	Man page Source code
modifyForAD_ADbreak	Source code
modifyForAD_AssignEigenMap	Source code
modifyForAD_MAKE_FIXED_VECTOR	Source code
modifyForAD_RCfunction	Source code
modifyForAD_RecyclingRule	Source code
modifyForAD_calculate	Source code
modifyForAD_chainedCall	Source code
modifyForAD_eigenBlock	Source code
modifyForAD_getDerivs_wrapper	Source code
modifyForAD_getSetValues	Source code
modifyForAD_indexingBracket	Source code
modifyForAD_matinverse	Source code
modifyForAD_matmult	Source code
modifyForAD_nfMethod	Source code
modifyForAD_prependNimDerivs	Source code
modifyForAD_recordable	Source code
multiMaxSizeExprs	Source code
multinomial	Man page
multivariate-t	Man page
mvAccessHandler	Source code
mvInfoClass-Class	Man page
mvt	Man page
ndf_createDetermSimulate	Source code
ndf_createSingleMethod	Source code
ndf_createStochCalculate	Source code
ndf_createStochCalculateTrunc	Source code
ndf_createStochSimulate	Source code
ndf_createStochSimulateTrunc	Source code
ndf_createVirtualNodeFunctionDefinitionsList	Source code
ndf_generateGetParamFunction	Source code
newAssignmentExpression	Source code
newBracketExpr	Source code
newMacroPars	Source code
newModel	Man page
newNumberedObjects	Source code
newObjElementPtr	Source code
newSpacesFunction	Source code
nfCompilationInfoClass-Class	Man page
nfGetDefVar	Source code
nfMethod	Man page Source code
nfVar	Man page Source code
nfVar<-	Man page
nf_assignmentLHSvars	Source code
nf_changeNimKeywords	Source code
nf_changeNimKeywordsOne	Source code
nf_checkDSLcode	Source code
nf_checkDSLcode_buildDerivs	Source code
nf_checkDSLcode_derivs	Source code
nf_createAList	Source code
nf_createAllNamesFromMethodList	Source code
nf_createGeneratorFunctionArgs	Source code
nf_createGeneratorFunctionDef	Source code
nf_createRefClassDef	Source code
nf_createRefClassDef_fields	Source code
nf_createSetupOutputNames	Source code
nf_getBaseClassMethods	Source code
nf_getGeneratorFunction	Source code
nf_getInstances	Source code
nf_getMethodList	Source code
nf_getNamesFromSetupOutputDeclaration	Source code
nf_getRefClassObject	Source code
nf_getSetupOutputNames	Source code
nf_getVarFromAssignmentLHScode	Source code
nf_namesNotHidden	Source code
nf_preProcessMemberDataObject	Man page Source code
nf_processSetupFunctionBody	Source code
nf_substituteExceptFunctionsAndDollarSigns	Source code
nimArrMapExpr	Source code
nimArray	Man page Source code
nimArrayGeneralHandler	Source code
nimC	Man page Source code
nimCat	Man page Source code
nimCopy	Man page Source code
nimDeparse	Source code
nimDerivs	Man page Source code
nimDerivsInfoClass-Class	Man page
nimDerivsInfoClass_init_impl	Source code
nimDerivsInfoClass_output_init_impl	Source code
nimDerivsInfoClass_update_init_impl	Source code
nimDerivs_calcNodes	Source code
nimDerivs_model	Source code
nimDerivs_nf	Source code
nimDerivs_nf_charwrt	Source code
nimDerivs_nf_numericwrt	Source code
nimDim	Man page Source code
nimEigen	Man page Source code
nimEquals	Man page Source code
nimGenerateCpp	Source code
nimInteger	Man page Source code
nimIntegrate	Man page Source code
nimLogical	Man page Source code
nimMatrix	Man page Source code
nimNumeric	Man page Source code
nimOptim	Man page Source code
nimOptimDefaultControl	Man page Source code
nimOptimMethod	Man page Source code
nimPrint	Man page Source code
nimRep	Man page Source code
nimRound	Man page
nimSeq	Man page Source code
nimStep	Man page Source code
nimStop	Man page Source code
nimSvd	Man page Source code
nimSwitch	Man page Source code
nimble	Man page
nimble-R-functions	Man page
nimble-package	Man page
nimbleCode	Man page Source code
nimbleExternalCall	Man page Source code
nimbleFinalize	Source code
nimbleFunction	Man page Source code
nimbleFunctionBase	Man page
nimbleFunctionBase-class	Man page
nimbleFunctionList	Man page
nimbleFunctionList-class	Man page
nimbleFunctionVirtual	Man page Source code
nimbleGeneralParseDeparse	Source code
nimbleGraphClass-Class	Man page
nimbleIncludeFile	Source code
nimbleInternalFunctions	Man page
nimbleList	Man page Source code
nimbleListDefClass-Class	Man page
nimbleMCMC	Man page Source code
nimbleModel	Man page Source code
nimbleOptions	Man page Source code
nimbleProjectClass-Class	Man page
nimbleRcall	Man page Source code
nimbleTryGetNativeSymbolInfo	Source code
nimbleType	Man page
nimbleType-class	Man page
nimbleType2argType	Source code
nimbleType2symbol	Source code
nimbleTypeList2argTypeList	Source code
nimbleTypeList2symbolTable	Source code
nimbleUserNamespace	Man page
nl.getDefinitionContent	Source code
nl.getGenerator	Source code
nl.getListDef	Source code
nl.getNestedGens	Source code
nlCompilationInfoClass-Class	Man page
nl_aggregateConsecutiveBlocks	Source code
nl_checkNodeNamesInModel	Source code
nl_checkVarNamesInModel	Source code
nl_createVarsAndFlatIndexRanges	Source code
nl_determineFlatIndex	Source code
nl_expandNodeIndex	Source code
nl_expandNodeIndexExpr	Source code
nl_getVarNameFromNodeName	Source code
nl_nodeVectorReadyNodes	Source code
nl_removeNodeNamesNotInSymbolTable	Source code
nl_vectorizedExpandNodeIndex	Source code
nl_vectorizedExpandNodeIndexExprs	Source code
nm_seq_noDecrease	Source code
nndf_addModelDollarSignsToMethods	Source code
nndf_createMethodList	Source code
nndf_createSetupFunction	Source code
nndf_extractNodeIndices	Source code
nndf_generateDynamicIndexLimitsExpr	Source code
nndf_generateGetBoundSwitchFunction	Source code
nndf_generateGetParamSwitchFunction	Source code
nndf_makeNodeFunctionIndexAccessCall	Source code
nndf_makeNodeFunctionIndexLabels	Source code
nndf_makeParentSizeExpr	Source code
nndf_replaceSetupOutputsWithIndexedNodeInfo	Source code
nodeFunctionNew	Source code
nodeFunctionVector	Source code
nodeFunctionVector_DerivsModelUpdateNodes	Source code
nodeFunctionVector_WithDerivsOutputNodes	Source code
nodeFunctions	Man page
numeric	Man page
optimControlNimbleList	Man page
optimDefaultControl	Man page Source code
optimResultNimbleList	Man page
outputCppArrayIndex2	Source code
outputCppBinaryOperation2	Source code
outputCppCommentBlock2	Source code
outputCppCout2	Source code
outputCppDereference2	Source code
outputCppExit2	Source code
outputCppFor2	Source code
outputCppIfElse2	Source code
outputCppLiteral	Source code
outputCppOpenBracket2	Source code
outputCppOpenBracketInvisible	Source code
outputCppOpenParentheses2	Source code
outputCppParseTree2	Source code
outputCppReference2	Source code
outputCppScopeResolution2	Source code
outputCppTempArray2	Source code
outputCppWhile2	Source code
outputEigenOperation2	Source code
outputGeneralCppFunction2	Source code
outputTypeCast2	Source code
parameterTransform	Man page
parseEvalNumeric	Source code
parseEvalNumericMany	Source code
parseEvalNumericManyFindErrors	Source code
parseEvalNumericManyHandleError	Source code
parseEvalNumericManyList	Source code
parseTreeSubstitute	Source code
pasteSemicolon	Source code
pdexp	Man page Source code
pexp_nimble	Man page Source code
phi	Man page Source code
pinvgamma	Man page Source code
plotABS	Source code
pointAt	Source code
populateCopierVector	Source code
populateIndexedNodeInfoTable	Source code
populateManyModelValuesMapAccess	Source code
populateManyModelVarMapAccess	Source code
populateNodeFxnVecNew	Source code
populateNodeFxnVecNew_nimDerivs	Source code
posteriorClass-Class	Man page
posterior_predictive	Man page
pow	Man page Source code
powHandler	Source code
pow_int	Man page Source code
pqDefined	Man page Source code
print	Man page
printErrors	Man page Source code
printMinTimeABS	Source code
printMonitors	Man page
printSamplers	Man page
prior_samples	Man page
probit	Man page Source code
processDistributionAliases	Source code
processKeyword	Source code
processKeywordCodeMemberFun	Source code
processKeywords_recurse	Source code
processMacrosInternal	Source code
processModelFile	Source code
processModelValuesAccess	Source code
processModelVarAccess	Source code
processNonParseableCode	Source code
processVarBlock	Source code
productSizeExprs	Source code
promoteArgTypes	Source code
promoteTypes	Source code
promptClass-Class	Man page
pt_nonstandard	Man page Source code
putCodeLinesInBrackets	Source code
qdexp	Man page Source code
qexp_nimble	Man page Source code
qinvgamma	Man page Source code
qt_nonstandard	Man page Source code
rCRP	Man page
rCalcDiffNodes	Source code
rCalcNodes	Source code
rFunHandler	Source code
rGetLogProbsNodes	Source code
rSimNodes	Source code
rankSample	Man page Source code
rcar_normal	Man page Source code
rcar_proper	Man page Source code
rcat	Man page Source code
rconstraint	Man page Source code
rdexp	Man page Source code
rdirch	Man page Source code
readBUGSmodel	Man page Source code
recurseGetListST	Source code
recurseSetSizes	Source code
recurseSetToEigenize	Source code
recurse_modifyForAD	Source code
reduceDF	Source code
registerDistributions	Man page Source code
removeClass-Class	Man page
removeColonOperator	Source code
removeExprClassLayer	Source code
removeExtraBrackets	Source code
removeExtraBracketsInternal	Source code
removeIndexing	Source code
removeIndices	Source code
removeLayerHandler	Source code
removeLogProbName	Source code
removeNonScalarElementsFromList	Source code
removeSamplers	Man page
rep	Man page
replaceAllCodeSuccessfully	Source code
replaceConstantsRecurse	Source code
replaceDistributionAliases	Source code
replaceWhatWeCan	Source code
replacementHandler	Source code
reprioritizeColonOperator	Source code
resetClass-Class	Man page
resetData	Man page
resetLabelFunctionCreators	Source code
resetMonitors	Man page
resize	Man page Source code
resize_NumberedObjects	Source code
resolveOneUnknownType	Source code
resolveUnknownTypes	Source code
rexp_nimble	Man page Source code
rflat	Man page Source code
rhalfflat	Man page Source code
rinterval	Man page Source code
rinvgamma	Man page Source code
rinvwish_chol	Man page Source code
rlkj	Man page
rlkj_corr_cholesky	Man page Source code
rmFunHandler	Source code
rmnorm_chol	Man page Source code
rmulti	Man page Source code
rmvt_chol	Man page Source code
rsqrtinvgamma	Man page Source code
rt_nonstandard	Man page Source code
run.time	Man page Source code
runAGHQ	Man page Source code
runCrossValidate	Man page Source code
runLaplace	Man page Source code
runMCMC	Man page Source code
rwish_chol	Man page Source code
safeDeparse	Source code
sameDir	Source code
sampler	Man page
sampler_AF_slice	Man page
sampler_BASE	Man page
sampler_CAR_normal	Man page
sampler_CAR_proper	Man page
sampler_CRP	Man page
sampler_CRP_concentration	Man page
sampler_RJ_fixed_prior	Man page
sampler_RJ_indicator	Man page
sampler_RJ_toggled	Man page
sampler_RW	Man page
sampler_RW_block	Man page
sampler_RW_block_lkj_corr_cholesky	Man page
sampler_RW_dirichlet	Man page
sampler_RW_lkj_corr_cholesky	Man page
sampler_RW_llFunction	Man page
sampler_RW_llFunction_block	Man page
sampler_RW_multinomial	Man page
sampler_RW_wishart	Man page
sampler_binary	Man page
sampler_categorical	Man page
sampler_crossLevel	Man page
sampler_ess	Man page
sampler_noncentered	Man page
sampler_polyagamma	Man page
sampler_posterior_predictive	Man page
sampler_prior_samples	Man page
sampler_slice	Man page
sampler_slice_CRP_base_param	Man page
samplers	Man page
samplesSummary	Man page Source code
sealClass-Class	Man page
seq	Man page
seqAlongHandler	Source code
seq_along	Man page
setAndCalculate	Man page
setAndCalculateDiff	Man page
setAndCalculateOne	Man page
setArg	Source code
setAsRowOrCol	Source code
setBoolValue	Source code
setCaller	Source code
setCharacterValue	Source code
setCharacterVectorValue	Source code
setClass-Class	Man page
setData	Man page
setDoublePtrFromSinglePtr	Source code
setDoubleValue	Source code
setInits	Man page
setIntValue	Source code
setMonitors	Man page
setMonitors2	Man page
setNimValues	Source code
setNimbleOption	Source code
setOldClass-Class	Man page
setOnePtrVectorOfPtrs	Source code
setPtrVectorOfPtrs	Source code
setRefClass-Class	Man page
setReturnType	Source code
setSamplerExecutionOrder	Man page
setSamplers	Man page
setSize	Man page Source code
setSmartPtrFromDoublePtr	Source code
setSmartPtrFromSinglePtr	Source code
setThin	Man page
setThin2	Man page
setValues	Source code
setValuesAccess	Source code
setupCodeTemplateClass-Class	Man page
setupMargNodes	Man page Source code
setupOutputs	Man page Source code
setup_OneAGHQuad	Source code
showClass-Class	Man page
simNodes	Man page
simNodesMV	Man page
simulate	Man page Source code
singleModelValuesAccess	Man page Source code
singleModelValuesAccessClass-Class	Man page
singleVarAccess	Source code
singleVarAccessClass	Man page
singleVarAccessClass-class	Man page
sizeADbreak	Source code
sizeAsReturnSymbol	Source code
sizeAsRowOrCol	Source code
sizeAssign	Source code
sizeAssignAfterRecursing	Source code
sizeBinaryCwise	Source code
sizeBinaryCwiseLogical	Source code
sizeBinaryReduction	Source code
sizeBinaryUnaryCwise	Source code
sizeChainedCall	Source code
sizeColonOperator	Source code
sizeConcatenate	Source code
sizeCppPointerDereference	Source code
sizeDiagonal	Source code
sizeDim	Source code
sizeDoubleBracket	Source code
sizeFor	Source code
sizeGetBound	Source code
sizeGetParam	Source code
sizeIndexingBracket	Source code
sizeInsertIntermediate	Source code
sizeIntegrate	Source code
sizeMatrixMult	Source code
sizeMatrixSquareReduction	Source code
sizeNFvar	Source code
sizeNewNimbleList	Source code
sizeNimArrayGeneral	Source code
sizeNimDerivs	Source code
sizeNimDerivsCalculate	Source code
sizeNimbleConvert	Source code
sizeNimbleFunction	Source code
sizeNimbleListReturningFunction	Source code
sizeNimbleUnconvert	Source code
sizeOneEigenCommand	Source code
sizeOptim	Source code
sizeOptimDefaultControl	Source code
sizePROTECT	Source code
sizePassByMap	Source code
sizeProc_storage_mode	Source code
sizeProxyForDebugging	Source code
sizeRCfunction	Source code
sizeRecyclingRule	Source code
sizeRecyclingRuleBesselK	Source code
sizeRecyclingRuleRfunction	Source code
sizeRep	Source code
sizeResizeNoPtr	Source code
sizeReturn	Source code
sizeReval	Source code
sizeRmultivarFirstArg	Source code
sizeRunTime	Source code
sizeScalar	Source code
sizeScalarModelOp	Source code
sizeScalarRecurse	Source code
sizeScalarRecurseAllowMaps	Source code
sizeSeq	Source code
sizeSetSize	Source code
sizeSimulate	Source code
sizeSolveOp	Source code
sizeSwitch	Source code
sizeTranspose	Source code
sizeUnaryCwise	Source code
sizeUnaryCwiseSquare	Source code
sizeUnaryNonaryCwise	Source code
sizeUnaryReduction	Source code
sizeUndefined	Source code
sizeValues	Source code
sizeVoidPtr	Source code
sizeWhich	Source code
sizeasDoublePtr	Source code
sizeforceEigenize	Source code
sizemap	Source code
sizemvAccessBracket	Source code
slice	Man page
specialHandling	Source code
splitCompletionForOrigNodes	Source code
splitVertexIDsToElementIDs	Source code
splitVertices	Source code
stick_breaking	Man page
stickbreaking	Man page
stop	Man page
stripArgs	Source code
stripDynamicallyIndexedWrapping	Source code
stripIndexWrapping	Source code
stripParentheses	Source code
stripPrefix	Source code
stripUnknownIndexFromVarName	Source code
stripUnknownIndexFromVarNameInBracketExpr	Source code
stripUnusedTypeDefs	Source code
summaryAGHQ	Man page Source code
summaryLaplace	Man page Source code
svd	Man page
svdHandler	Source code
svdNimbleList	Man page
symTypeFromSymTab	Source code
symbolDouble	Source code
symbolInt	Source code
symbolTable2cppVars	Source code
symbolTable2templateTypeSymbolTable	Source code
t	Man page
testBUGSmodel	Man page Source code
testConditionallyIndependentSets	Source code
toEigenAssign	Source code
toEigenAssignLHS	Source code
toEigenBinaryCwise	Source code
toEigenBinaryUnaryCwise	Source code
toEigenChainedCall	Source code
toEigenConcatenate	Source code
toEigenCppPointerDereference	Source code
toEigenFor	Source code
toEigenGetBound	Source code
toEigenGetParam	Source code
toEigenIgnoreForNow	Source code
toEigenInsertIntermediate	Source code
toEigenMatrixMult	Source code
toEigenMaybe	Source code
toEigenNewNimbleList	Source code
toEigenNimArrayGeneral	Source code
toEigenNimbleFunction	Source code
toEigenNo	Source code Source code
toEigenOptimIntegrate	Source code
toEigenRCfunction	Source code
toEigenRep	Source code
toEigenScalarModelOp	Source code
toEigenScalarRecurse	Source code
toEigenSetSize	Source code
toEigenUnaryCwise	Source code
toEigenUnaryReduction	Source code
toEigenUseRule	Source code
toEigenValues	Source code
toEigenYes	Source code
topologicallySortNodes	Man page
updateADproxyModelMethods	Source code
usedInIndex	Source code
valueInCompiledNimbleFunction	Man page Source code
values	Man page Source code
values<-	Man page
varAndIndices2flatIndex	Source code
varAndIndices2mapParts	Source code
varInfoClass-Class	Man page
vectorIndex_2_flat	Source code
waic	Man page
waicDetailsNimbleList	Man page
waicNimbleList	Man page
which	Man page
whyInvalid	Source code
wishart	Man page
withNimbleOptions	Man page Source code
wrapAsNumeric	Source code
writeCode	Source code