| Chiang2FCWB |
Man page
Source code
|
| WriteVTKalphashape |
Man page
Source code
|
| _PACKAGE |
Man page
|
| applyTransform.neuron |
Source code
|
| applyTransform.neuronlist |
Source code
|
| arbour.clusters |
Man page
Source code
|
| arbour.clusters.neuron |
Man page
Source code
|
| arbour.clusters.neuronlist |
Man page
Source code
|
| arbour_cable |
Man page
Source code
|
| arbour_cable.catmaidneuron |
Man page
|
| arbour_cable.neuron |
Man page
Source code
|
| arbour_cable.neuronlist |
Man page
Source code
|
| arbours |
Man page
Source code
|
| arbours.neuron |
Man page
Source code
|
| arbours.neuronlist |
Man page
Source code
|
| as.mesh3d.kde |
Man page
Source code
|
| ashape2mesh3d |
Man page
Source code
|
| assign.connector.info |
Man page
Source code
|
| assign.connector.info.neuron |
Man page
Source code
|
| assign.connector.info.neuronlist |
Man page
Source code
|
| assign_cable.polarity |
Man page
Source code
|
| assign_lh_neuron |
Man page
Source code
|
| assign_strahler |
Man page
Source code
|
| assign_strahler.neuron |
Man page
Source code
|
| assign_strahler.neuronlist |
Man page
Source code
|
| assignside |
Man page
Source code
|
| assignside.names |
Source code
|
| assignsides.l1 |
Source code
|
| assignsynapses |
Source code
|
| average.tracts |
Man page
Source code
|
| axonal_endings |
Man page
Source code
|
| axonic_cable |
Man page
Source code
|
| axonic_cable.catmaidneuron |
Man page
|
| axonic_cable.neuron |
Man page
Source code
|
| axonic_cable.neuronlist |
Man page
Source code
|
| axonic_endings |
Man page
Source code
|
| axonic_points |
Man page
Source code
|
| axonic_points.neuron |
Man page
Source code
|
| axonic_points.neuronlist |
Man page
Source code
|
| brainmaps_xyz2id_chunk |
Source code
|
| catmaid_annotate_partners |
Man page
Source code
|
| catmaid_batch_join |
Source code
Source code
|
| catmaid_connector_nodes |
Man page
Source code
|
| catmaid_controlled_upload |
Man page
Source code
|
| catmaid_convert_time |
Source code
|
| catmaid_delete_connectors |
Man page
Source code
|
| catmaid_delete_neuron |
Man page
Source code
|
| catmaid_delete_neurons |
Man page
Source code
|
| catmaid_duplicated |
Man page
Source code
|
| catmaid_find_likely_merge |
Man page
Source code
|
| catmaid_get_annotated_partner |
Man page
Source code
|
| catmaid_get_neuronid |
Man page
Source code
|
| catmaid_get_server |
Man page
Source code
|
| catmaid_get_tag |
Man page
Source code
|
| catmaid_get_tag.neuron |
Source code
|
| catmaid_get_tag.neuronlist |
Source code
|
| catmaid_interactive_join |
Man page
Source code
|
| catmaid_interactive_name_transfer |
Man page
Source code
|
| catmaid_join_skeletons |
Man page
Source code
|
| catmaid_link_connectors |
Man page
Source code
|
| catmaid_lock_neurons |
Man page
Source code
|
| catmaid_node_time |
Man page
Source code
|
| catmaid_query_meta_annotations |
Source code
|
| catmaid_set_meta_annotations |
Man page
Source code
|
| catmaid_skeletons_in_bbx |
Man page
Source code
|
| catmaid_uncontrolled_upload |
Source code
|
| catmaid_unlock_neurons |
Man page
Source code
|
| catmaid_update_radius |
Man page
Source code
|
| catmaid_upload_neurons |
Man page
Source code
|
| catnat |
Man page
|
| catnat-package |
Man page
|
| cluster_synapses_within_skeleton |
Man page
Source code
|
| cluster_synapses_within_skeleton.neuron |
Man page
Source code
|
| cluster_synapses_within_skeleton.neuronlist |
Man page
Source code
|
| clusterbysynapses |
Man page
Source code
|
| combine.alphashape |
Man page
|
| connectivity_matrix |
Man page
Source code
|
| connectivity_similarity |
Man page
Source code
|
| connectivity_similarity.matrix |
Man page
Source code
|
| connectivity_similarity.numeric |
Man page
Source code
|
| connectivity_similarity_distance |
Man page
Source code
|
| connectivity_similarity_matrix |
Man page
Source code
|
| connector_URL |
Man page
Source code
|
| connectors.inside |
Source code
|
| correctsoma |
Man page
Source code
|
| create_skeleton_from_nrrd |
Man page
Source code
|
| create_tracing_samplesheet |
Man page
Source code
|
| dendritic.morphogenisis |
Source code
|
| dendritic.morphogenisis.neuronlist |
Source code
|
| dendritic_cable |
Man page
Source code
|
| dendritic_cable.catmaidneuron |
Man page
|
| dendritic_cable.neuron |
Man page
Source code
|
| dendritic_cable.neuronlist |
Man page
Source code
|
| dendritic_endings |
Man page
Source code
|
| dendritic_points |
Man page
Source code
|
| dendritic_points.neuron |
Man page
Source code
|
| dendritic_points.neuronlist |
Man page
Source code
|
| deselect_neurons |
Man page
|
| distance.from.first.branchpoint |
Man page
Source code
|
| distance.from.first.branchpoint.neuron |
Man page
Source code
|
| distance.from.first.branchpoint.neuronlist |
Man page
Source code
|
| downstream.deletion.test |
Man page
Source code
|
| endings |
Source code
|
| fafb_frags_ids |
Man page
Source code
|
| fafb_frags_skeletons |
Man page
Source code
|
| fafb_neuron_details |
Man page
Source code
|
| fafb_seg |
Man page
Source code
|
| fafb_seg_conn |
Man page
Source code
|
| fafb_seg_hitlist |
Man page
Source code
|
| fafb_seg_tracing_list |
Man page
Source code
|
| fafb_segs_stitch_volumes |
Man page
Source code
|
| fafbseg_get_node_count |
Man page
Source code
|
| fafbseg_get_volumes |
Source code
|
| fafbseg_join_connectors_in_ngl_volumes |
Man page
Source code
|
| fafbseg_transfer_connectors |
Man page
Source code
|
| fafbseg_transfer_tags |
Man page
Source code
|
| fafbseg_update_node_radii |
Man page
Source code
|
| find.symmetric |
Source code
|
| flow.centrality |
Man page
Source code
|
| flow.centrality.neuron |
Man page
Source code
|
| flow.centrality.neuronlist |
Man page
Source code
|
| get.hxsurf |
Man page
|
| get.skeleton.from.flycircuit |
Man page
Source code
|
| get.synapses |
Man page
Source code
|
| get.synapses.neuron |
Man page
|
| get.synapses.neuronlist |
Man page
|
| get_connected_skeletons |
Man page
Source code
|
| in_neuropil |
Man page
Source code
|
| in_neuropil.neuron |
Man page
Source code
|
| in_neuropil.neuronlist |
Man page
Source code
|
| inside_neuropils |
Man page
Source code
|
| inside_neuropils.neuron |
Man page
Source code
|
| inside_neuropils.neuronlist |
Man page
Source code
|
| label_neuron.class |
Man page
Source code
|
| local_conn |
Man page
Source code
|
| make.anatomical.model |
Man page
Source code
|
| make.mirror.transform |
Man page
|
| manually_assign_axon_dendrite |
Man page
Source code
|
| manually_assign_axon_dendrite.neuron |
Man page
Source code
|
| manually_assign_axon_dendrite.neuronlist |
Man page
Source code
|
| map_fafbsegs_to_neuron |
Man page
Source code
|
| mark.microtubules |
Man page
Source code
|
| mark.microtubules.neuron |
Man page
Source code
|
| mark.microtubules.neuronlist |
Man page
Source code
|
| microtubules.errors |
Man page
Source code
|
| mixed_points |
Man page
Source code
|
| mixed_points.neuron |
Man page
Source code
|
| mixed_points.neuronlist |
Man page
Source code
|
| napplyTransform |
Man page
Source code
|
| napplyTransform.neuron |
Man page
Source code
|
| napplyTransform.neuronlist |
Man page
Source code
|
| nblast_bothways |
Man page
Source code
|
| neurites |
Man page
Source code
|
| neurites.neuron |
Man page
Source code
|
| neurites.neuronlist |
Man page
Source code
|
| neuron.heatmap |
Man page
Source code
|
| neurons.inside |
Man page
Source code
|
| neurons.inside.alphashape |
Source code
|
| neuronvolume3d |
Man page
Source code
|
| neuronvolume_get_radius |
Source code
|
| node.contribution.to.skeletons |
Man page
Source code
|
| open_l1 |
Man page
Source code
|
| overlap.connectivity.matrix |
Man page
Source code
|
| overlap.connectivity.matrix.catmaid |
Man page
Source code
|
| plot3d.split |
Man page
Source code
|
| points_in_neuropil |
Man page
Source code
|
| pointsinsidemesh |
Man page
|
| polaritycluster |
Source code
|
| possibly.numeric |
Source code
|
| primary.neurite |
Man page
Source code
|
| primary.neurite.neuron |
Man page
Source code
|
| primary.neurite.neuronlist |
Man page
Source code
|
| primary_dendrite_cable |
Man page
Source code
|
| primary_dendrite_cable.catmaidneuron |
Man page
|
| primary_dendrite_cable.neuron |
Man page
Source code
|
| primary_dendrite_cable.neuronlist |
Man page
Source code
|
| primary_dendrite_endings |
Man page
Source code
|
| primary_dendrite_points |
Man page
Source code
|
| primary_dendrite_points.neuron |
Man page
Source code
|
| primary_dendrite_points.neuronlist |
Man page
Source code
|
| prune |
Man page
|
| prune.catmaidneuron |
Man page
|
| prune_by_tag |
Man page
Source code
|
| prune_by_tag.catmaidneuron |
Man page
Source code
|
| prune_by_tag.neuron |
Man page
Source code
|
| prune_by_tag.neuronlist |
Man page
Source code
|
| prune_distal |
Man page
Source code
|
| prune_in_volume |
Man page
Source code
|
| prune_in_volume.neuron |
Man page
Source code
|
| prune_in_volume.neuronlist |
Man page
Source code
|
| prune_microtubules |
Man page
Source code
|
| prune_microtubules.neuron |
Man page
Source code
|
| prune_microtubules.neuronlist |
Man page
Source code
|
| prune_online |
Man page
Source code
|
| prune_online.neuron |
Man page
Source code
|
| prune_online.neuronlist |
Man page
Source code
|
| prune_strahler |
Man page
|
| prune_strahler.catmaidneuron |
Man page
Source code
|
| prune_vertices |
Man page
|
| prune_vertices.catmaidneuron |
Man page
|
| read.neurons.catmaid.meta |
Man page
Source code
|
| read.neurons.fafbseg |
Man page
Source code
|
| reroot.flycircuit.neuron |
Man page
Source code
|
| resample |
Man page
|
| resample.catmaidneuron |
Man page
Source code
|
| resample.catmaidneuronlist |
Source code
|
| resample.neuronlist |
Source code
|
| rescue.dps |
Man page
Source code
|
| reverse.name.side |
Man page
Source code
|
| scan4matching |
Man page
Source code
|
| scan_lh_matches |
Man page
Source code
|
| seebroken3d |
Man page
Source code
|
| seesplit3d |
Man page
Source code
|
| segments_ranked_post |
Man page
Source code
|
| segments_ranked_pre |
Man page
Source code
|
| select_neurons |
Man page
|
| select_points |
Man page
|
| set_segmentation_location |
Man page
Source code
|
| shift.neurons |
Man page
Source code
|
| sholl_data |
Man page
Source code
|
| skeleton_connectivity_matrix |
Man page
Source code
|
| soma |
Man page
Source code
|
| soma.neuron |
Man page
Source code
|
| soma.neuronlist |
Man page
Source code
|
| somaid |
Man page
Source code
|
| somaid.neuron |
Man page
Source code
|
| somaid.neuronlist |
Man page
Source code
|
| somapos |
Man page
Source code
|
| somapos.neuron |
Man page
Source code
|
| somapos.neuronlist |
Man page
Source code
|
| spinny |
Source code
|
| splitscan |
Man page
|
| starting.neurite |
Man page
Source code
|
| starting.neurite.neuron |
Man page
Source code
|
| starting.neurite.neuronlist |
Man page
Source code
|
| subtree |
Man page
Source code
|
| synapse.contribution.to.skeletons |
Man page
Source code
|
| synapsecolours.neuron |
Man page
Source code
|
| tracer.neuron.stats |
Man page
Source code
|
| tracer.plot |
Man page
Source code
|
| tracer.treenodes.plot |
Man page
Source code
|
| transform3dalphashape |
Man page
|
| unique.neurons.trace |
Source code
|
| unsure_cable |
Man page
Source code
|
| unsure_cable.catmaidneuron |
Man page
|
| unsure_cable.neuron |
Man page
Source code
|
| unsure_cable.neuronlist |
Man page
Source code
|
| update_names |
Man page
Source code
|
| update_neurons |
Man page
Source code
|
| update_single_samplesheet |
Man page
Source code
|
| update_tracing_samplesheets |
Man page
Source code
|
| update_tracing_sheet |
Source code
|
| visualise.microtubules |
Man page
Source code
|
| wind |
Source code
|
| write.spin.split.swc |
Man page
Source code
|
| write.spin.swc |
Man page
Source code
|
