PAMClust | R Documentation |
Performs PAM clustering on the active assay of the given Seurat object. Looks for a distance matrix 'dist' in the 'misc' field of the active assay.
PAMClust(pisces.obj, kmin = 2, kmax = 5)
pisces.obj |
A Seurat object w/ either 'dist' in the 'misc' field or w/ 'scale.data'. |
kmin |
Minimum number of clusters. Default of 2. |
kmax |
Maximum number of clusters. Default of 5. |
Seurat object with clustering object 'louvain.clust' added to 'misc' field of active assay. And optimal clustering set as 'pisces.cluster' label for active assay.
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