WeightedVIPER | R Documentation |
MetaVIPER implementation that will perform a weighted stouffer integration based on highest NES.
WeightedVIPER(ges, net.list, use.nets, ret.weights = FALSE)
ges |
Gene Expression Signature (features X samples) |
net.list |
List object with the networks to be used |
use.nets |
Optional argument to sslect the top n networks. If not specified, all networks are used. |
ret.weights |
Optional argument to return the network weight matrix as well as the VIPER matrix. FALSE by default. |
Either a viper matrix, or a list with a viper matrix and the network weight matrix.
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