WeightedVIPER: MetaVIPER implementation that will perform a weighted...

View source: R/viper_funcs.R

WeightedVIPERR Documentation

MetaVIPER implementation that will perform a weighted stouffer integration based on highest NES.

Description

MetaVIPER implementation that will perform a weighted stouffer integration based on highest NES.

Usage

WeightedVIPER(ges, net.list, use.nets, ret.weights = FALSE)

Arguments

ges

Gene Expression Signature (features X samples)

net.list

List object with the networks to be used

use.nets

Optional argument to sslect the top n networks. If not specified, all networks are used.

ret.weights

Optional argument to return the network weight matrix as well as the VIPER matrix. FALSE by default.

Value

Either a viper matrix, or a list with a viper matrix and the network weight matrix.


califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.