pairwise_cluster_mrs: Identified MRs based on a pairwise comparison of clusters.
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
pairwise_cluster_mrs R Documentation
Identified MRs based on a pairwise comparison of clusters.
Description
Identified MRs based on a pairwise comparison of clusters.
Usage
pairwise_cluster_mrs(norm.counts, clust.vec, net.list, num.mrs = 10)
Arguments
norm.counts
Matrix of normalized counts (features X samples).
clust.vec
Clustering vector.
net.list
List of ARACNe3 networks.
num.mrs
Number of master regulators to return for each cluster. Default of 10.
Value
A three member list w/ 'positive' and 'negative' MRs as well as the full NaRnEA results 'mr.narnea'.
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| pairwise_cluster_mrs | R Documentation |
Identified MRs based on a pairwise comparison of clusters.
Description
Identified MRs based on a pairwise comparison of clusters.
Usage
pairwise_cluster_mrs(norm.counts, clust.vec, net.list, num.mrs = 10)
Arguments
norm.counts |
Matrix of normalized counts (features X samples). |
clust.vec |
Clustering vector. |
net.list |
List of ARACNe3 networks. |
num.mrs |
Number of master regulators to return for each cluster. Default of 10. |
Value
A three member list w/ 'positive' and 'negative' MRs as well as the full NaRnEA results 'mr.narnea'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.