pam_k: Optimizes PAM clustering over a range of cluter numbers 'k'...
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
View source: R/cluster_funcs.R
pam_k R Documentation
Optimizes PAM clustering over a range of cluter numbers 'k' using silhouette score.
Description
Optimizes PAM clustering over a range of cluter numbers 'k' using silhouette score.
Usage
pam_k(dist.mat, kmin = 2, kmax = 5)
Arguments
dist.mat
Distance matrix or distance structure like that generated by 'dist'.
kmin
Minimum number of clusters. Default of 2.
kmax
Maximum number of clusters. Default of 5.
Value
A list;
'opt.clust' with the optimal clustering;
'clustering.objs', a list of all clusterings generated;
'sil.scores' a list of silhouette scores for each clustering object.
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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View source: R/cluster_funcs.R
| pam_k | R Documentation |
Optimizes PAM clustering over a range of cluter numbers 'k' using silhouette score.
Description
Optimizes PAM clustering over a range of cluter numbers 'k' using silhouette score.
Usage
pam_k(dist.mat, kmin = 2, kmax = 5)
Arguments
dist.mat |
Distance matrix or distance structure like that generated by 'dist'. |
kmin |
Minimum number of clusters. Default of 2. |
kmax |
Maximum number of clusters. Default of 5. |
Value
A list; 'opt.clust' with the optimal clustering; 'clustering.objs', a list of all clusterings generated; 'sil.scores' a list of silhouette scores for each clustering object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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