qc_plot: Generates QC violin plots for depth, detected genes, and MT...
In califano-lab/PISCES: Protein Activity Inferecne in Single Cells
View source: R/plotting_funcs.R
qc_plot R Documentation
Generates QC violin plots for depth, detected genes, and MT
qc_plot(raw.counts, species = c("hum", "mur"), genes = c("symb", "ensg"))
\itemraw.countsMatrix of raw gene expression data (features X samples).
\itemspeciesOne of ‘c(’hum', 'mur')', specifying human or murine data respectively. If not specified, assumes human.
\itemgenesOne of ‘c(’symb', 'ensg')', specifying gene symbols or ENSG names respectively. If not specified, assumed symbols.
A ggplot object.
Generates QC violin plots for depth, detected genes, and MT
califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.
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View source: R/plotting_funcs.R
| qc_plot | R Documentation |
Generates QC violin plots for depth, detected genes, and MT qc_plot(raw.counts, species = c("hum", "mur"), genes = c("symb", "ensg")) \itemraw.countsMatrix of raw gene expression data (features X samples). \itemspeciesOne of ‘c(’hum', 'mur')', specifying human or murine data respectively. If not specified, assumes human. \itemgenesOne of ‘c(’symb', 'ensg')', specifying gene symbols or ENSG names respectively. If not specified, assumed symbols. A ggplot object. Generates QC violin plots for depth, detected genes, and MT
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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