sig_features: Returns a list of significant proteins for each sample...

View source: R/mr_funcs.R

sig_featuresR Documentation

Returns a list of significant proteins for each sample (column) in the given NES matrix. Identifies significant proteins by Benjamini-Hochberg at the given significance level.

Description

Returns a list of significant proteins for each sample (column) in the given NES matrix. Identifies significant proteins by Benjamini-Hochberg at the given significance level.

Usage

sig_features(nes.mat, p.val.thresh = 0.05)

Arguments

nes.mat

Matrix of NES scores (features X columns), such as that generated by NaRnEA analysis.

p.val.thresh

p-value threshold. Default of 0.05.

Value

List of lists; one list for each sample (column), containing the names of significant proteins.


califano-lab/PISCES documentation built on Jan. 11, 2023, 5:34 a.m.