OneSide.fixEffect: One-Sided Tests with fixed effect sizes

In TrialSize: R Functions for Chapter 3,4,6,7,9,10,11,12,14,15 of Sample Size Calculation in Clinical Research

Description

One-sided tests

Ho: δ_j = 0

Ha: δ_j > 0

Usage

OneSide.fixEffect(m, m1, delta, a1, r1, fdr)

Arguments

m	m is the total number of multiple tests
m1	m1 = m - m0. m0 is the number of tests which the null hypotheses are true ; m1 is the number of tests which the alternative hypotheses are true. (or m1 is the number of prognostic genes)
delta	δ_j is the constant effect size for jth test. δ_j=(E(Xj)-E(Yj))/σ_j. X_{ij}(Y_{ij}) denote the expression level of gene j for subject i in group 1( and group 2, respectively) with common variance σ_{j}^{2}. We assume δ_j=0,~ j~ in~ M0 and δ_j >0, ~j~ in~ M1=effect size for prognostic genes.
a1	a1 is the allocation proportion for group 1. a2=1-a1.
r1	r1 is the number of true rejection
fdr	fdr is the FDR level.

Details

alpha_star=r1*fdr/((m-m1)*(1-fdr)), which is the marginal type I error level for r1 true rejection with the FDR controlled at f.

beta_star=1-r1/m1, which is equal to 1-power.

References

Chow SC, Shao J, Wang H. Sample Size Calculation in Clinical Research. New York: Marcel Dekker, 2003

Examples

Example.12.2.1<-OneSide.fixEffect(m=4000,m1=40,delta=1,a1=0.5,r1=24,fdr=0.01)
Example.12.2.1
# n=68; n1=34=n2

TrialSize documentation built on July 8, 2020, 7:19 p.m.