Files in crmPack

Object-Oriented Implementation of CRM Designs

NEWS.md R/Rules-methods.R R/Samples-class.R R/Model-class.R R/Design-methods.R R/McmcOptions-methods.R R/Simulations-methods.R R/mcmc.R R/Model-methods.R R/McmcOptions-class.R R/Simulations-class.R R/Design-class.R R/Data-methods.R R/fromQuantiles.R R/Rules-class.R R/writeModel.R R/helpers.R R/crmPack-package.R R/Samples-methods.R R/Data-class.R inst/doc/example.R inst/doc/guidelines.Rmd inst/doc/example.pdf vignettes/guidelines.Rmd man/StoppingMinCohorts.Rd man/plot-DualSimulations-missing-method.Rd man/GeneralModel-class.Rd man/DualResponsesSamplesDesign-class.Rd man/plot-PseudoDualSimulations-missing-method.Rd man/Simulations.Rd man/NextBestNCRM.Rd man/plot-Samples-ModelTox-method.Rd man/TDDesign.Rd man/StoppingPatientsNearDose-class.Rd man/IncrementsRelative.Rd man/is.range.Rd man/joinModels.Rd man/StoppingTDCIRatio-class.Rd man/is.bool.Rd man/StoppingMinPatients-class.Rd man/matchTolerance.Rd man/multiplot.Rd man/LogisticKadane.Rd man/NextBestThreePlusThree.Rd man/NextBestThreePlusThree-class.Rd man/plotGain.Rd man/LogisticNormal-class.Rd man/Data-class.Rd man/summary-PseudoDualFlexiSimulations-method.Rd man/LogisticNormal.Rd man/myBayesLogit.Rd man/LogisticKadane-class.Rd man/show-GeneralSimulationsSummary-method.Rd man/update-LogisticIndepBeta-method.Rd man/IncrementsNumDoseLevels.Rd man/Validate.Rd man/maxSize.Rd man/ThreePlusThreeDesign.Rd man/CohortSizeConst.Rd man/crmPack-package.Rd man/as.list-GeneralData-method.Rd man/minSize.Rd man/DataParts.Rd man/mcmc.Rd man/initialize-DualEndpointOld-method.Rd man/StoppingTargetBiomarker.Rd man/fit.Rd man/StoppingTargetBiomarker-class.Rd man/Model-class.Rd man/Samples.Rd man/AllModels-class.Rd man/plot-PseudoDualFlexiSimulations-missing-method.Rd man/StoppingGstarCIRatio.Rd man/noOverlap.Rd man/StoppingMTDdistribution.Rd man/NextBestMaxGain-class.Rd man/ProbitLogNormal.Rd man/summary-PseudoDualSimulations-method.Rd man/PseudoSimulations-class.Rd man/PseudoSimulations.Rd man/CohortSizeMax-class.Rd man/Design-class.Rd man/NextBestMTD.Rd man/LogisticLogNormalMixture-class.Rd man/CohortSizeParts.Rd man/StoppingGstarCIRatio-class.Rd man/plot-SimulationsSummary-missing-method.Rd man/LogisticIndepBeta-class.Rd man/logit.Rd man/Increments-class.Rd man/DualEndpointRW-class.Rd man/Report.Rd man/IncrementsRelativeParts.Rd man/LogisticLogNormalSub-class.Rd man/simulate-DualResponsesSamplesDesign-method.Rd man/plot-PseudoDualSimulationsSummary-missing-method.Rd man/SimulationsSummary-class.Rd man/IncrementMin.Rd man/setSeed.Rd man/ExpEff.Rd man/McmcOptions-class.Rd man/CohortSizeDLT-class.Rd man/show-DualSimulationsSummary-method.Rd man/plot-Data-ModelTox-method.Rd man/CohortSizeRange-class.Rd man/Stopping-class.Rd man/MinimalInformative.Rd man/or-StoppingAny-Stopping.Rd man/PseudoDualSimulations.Rd man/DualResponsesDesign.Rd man/simulate-TDDesign-method.Rd man/nextBest.Rd man/update-Data-method.Rd man/update-DataDual-method.Rd man/plot-PseudoSimulationsSummary-missing-method.Rd man/plotDualResponses.Rd man/show-SimulationsSummary-method.Rd man/writeModel.Rd man/PseudoDualFlexiSimulations.Rd man/StoppingMinPatients.Rd man/is.wholenumber.Rd man/summary-PseudoSimulations-method.Rd man/StoppingList.Rd man/stopTrial.Rd man/EffFlexi-class.Rd man/IncrementsNumDoseLevels-class.Rd man/LogisticNormalMixture.Rd man/PseudoSimulationsSummary-class.Rd man/CohortSizeParts-class.Rd man/Simulations-class.Rd man/StoppingTDCIRatio.Rd man/IncrementsRelativeParts-class.Rd man/saveSample.Rd man/qinvGamma.Rd man/DualResponsesSamplesDesign.Rd man/DualEndpointRW.Rd man/StoppingAny-class.Rd man/plot-GeneralSimulations-missing-method.Rd man/simulate-DualResponsesDesign-method.Rd man/get-Samples-character-method.Rd man/PseudoDualSimulationsSummary-class.Rd man/DualEndpointBeta-class.Rd man/Quantiles2LogisticNormal.Rd man/DualSimulations-class.Rd man/TDDesign-class.Rd man/DualEndpoint-class.Rd man/update-DataParts-method.Rd man/and-Stopping-Stopping-method.Rd man/TDsamplesDesign.Rd man/plot-Samples-DualEndpoint-method.Rd man/StoppingHighestDose.Rd man/TDsamplesDesign-class.Rd man/myBarplot.Rd man/ProbitLogNormal-class.Rd man/plot-GeneralSimulationsSummary-missing-method.Rd man/McmcOptions.Rd man/update-EffFlexi-method.Rd man/IncrementsRelativeDLT-class.Rd man/examine.Rd man/LogisticNormalMixture-class.Rd man/RuleDesign.Rd man/is.scalar.Rd man/LogisticNormalFixedMixture-class.Rd man/IncrementsRelativeDLT.Rd man/StoppingCohortsNearDose-class.Rd man/biomLevel.Rd man/CohortSizeMin-class.Rd man/StoppingMinCohorts-class.Rd man/NextBestMaxGainSamples.Rd man/size.Rd man/sampleSize.Rd man/CohortSizeMin.Rd man/Design.Rd man/plot-Samples-ModelEff-method.Rd man/NextBestTD.Rd man/NextBestTD-class.Rd man/NextBestTDsamples.Rd man/DataDual.Rd man/StoppingAny.Rd man/NextBestMaxGainSamples-class.Rd man/StoppingMTDdistribution-class.Rd man/show-PseudoDualSimulationsSummary-method.Rd man/GeneralSimulations-class.Rd man/update-Effloglog-method.Rd man/DualEndpoint.Rd man/LogisticLogNormal.Rd man/IncrementMin-class.Rd man/rinvGamma.Rd man/maxDose.Rd man/joinBodies.Rd man/plot-DualSimulationsSummary-missing-method.Rd man/DataParts-class.Rd man/NextBestTDsamples-class.Rd man/PseudoDualFlexiSimulations-class.Rd man/NextBestDualEndpoint-class.Rd man/getResultList.Rd man/is.probability.Rd man/DualDesign-class.Rd man/plot-Samples-Model-method.Rd man/StoppingList-class.Rd man/DataMixture.Rd man/summary-DualSimulations-method.Rd man/StoppingAll-class.Rd man/PseudoDualSimulations-class.Rd man/prob.Rd man/dinvGamma.Rd man/DualEndpointBeta.Rd man/ModelTox-class.Rd man/Effloglog.Rd man/crmPackExample.Rd man/probit.Rd man/ModelPseudo-class.Rd man/IncrementsRelative-class.Rd man/plot-DataDual-ModelEff-method.Rd man/plot-DataDual-missing-method.Rd man/DualSimulationsSummary-class.Rd man/DualEndpointEmax-class.Rd man/fitGain.Rd man/gain.Rd man/approximate.Rd man/plot-Data-missing-method.Rd man/and-StoppingAll-Stopping-method.Rd man/Effloglog-class.Rd man/NextBest-class.Rd man/Data.Rd man/CohortSizeRange.Rd man/Samples-class.Rd man/safeInteger.Rd man/NextBestMTD-class.Rd man/or-Stopping-Stopping.Rd man/LogisticIndepBeta.Rd man/DualEndpointOld-class.Rd man/DualResponsesDesign-class.Rd man/StoppingHighestDose-class.Rd man/LogisticLogNormalSub.Rd man/LogisticLogNormal-class.Rd man/StoppingPatientsNearDose.Rd man/GeneralSimulationsSummary-class.Rd man/DataDual-class.Rd man/printVignette.Rd man/DualEndpointEmax.Rd man/DualSimulations.Rd man/NextBestNCRM-class.Rd man/simulate-TDsamplesDesign-method.Rd man/plot.gtable.Rd man/CohortSizeConst-class.Rd man/simulate-Design-method.Rd man/CohortSizeMax.Rd man/GeneralSimulations.Rd man/LogisticNormalFixedMixture.Rd man/simulate-DualDesign-method.Rd man/NextBestDualEndpoint.Rd man/LogisticLogNormalMixture.Rd man/CohortSize-class.Rd man/getMinInfBeta.Rd man/ModelEff-class.Rd man/or-Stopping-StoppingAny.Rd man/crmPackHelp.Rd man/StoppingCohortsNearDose.Rd man/getEff.Rd man/DualDesign.Rd man/StoppingAll.Rd man/DataMixture-class.Rd man/GeneralData-class.Rd man/summary-Simulations-method.Rd man/pinvGamma.Rd man/NextBestMaxGain.Rd man/show-PseudoSimulationsSummary-method.Rd man/RuleDesign-class.Rd man/StoppingTargetProb-class.Rd man/EffFlexi.Rd man/is.probRange.Rd man/and-Stopping-StoppingAll-method.Rd man/CohortSizeDLT.Rd man/summary-GeneralSimulations-method.Rd man/dose.Rd man/StoppingTargetProb.Rd man/simulate-RuleDesign-method.Rd