API for dowser
B Cell Receptor Phylogenetics Toolkit

Global functions
.onAttach Source code
BiopsyTrees Man page
ExampleAirr Man page
ExampleClones Man page
ExampleDbChangeo Man page
ExampleMixedClones Man page
ExampleMixedDb Man page
IsotypeTrees Man page
TimeTrees Man page
airrClone Man page
airrClone-class Man page
bootstrapClones Source code
bootstrapTrees Man page Source code
buildClonalGermline Man page Source code
buildGermline Man page Source code
buildIgphyml Man page Source code
buildPML Man page Source code
buildPhylo Man page Source code
buildPratchet Man page Source code
buildRAxML Man page Source code
calcRF Man page Source code
cleanAlignment Source code
collapseNodes Man page Source code
colorTrees Man page Source code
combineColors Source code
condenseTrees Man page Source code
consensus_tree Source code
correlationTest Man page Source code
createGermlines Man page Source code
downsampleClone Man page Source code
dowser Man page
dowser-package Man page
findSwitches Man page Source code
formatClones Man page Source code
getBootstraps Man page Source code
getDivergence Man page Source code
getGermline Man page Source code
getNodeSeq Man page Source code
getPalette Man page Source code
getSeq Man page Source code
getSubTaxa Man page Source code
getSubclones Man page Source code
getTrees Man page Source code
makeAirrClone Man page Source code
makeModelFile Man page Source code
makeTrees Source code
maskCodons Man page Source code
maskSequences Man page Source code
matching_function_parallel Source code
plotTrees Man page Source code
processClones Source code
readFasta Man page Source code
readIMGT Man page Source code
readLineages Man page Source code
readModelFile Man page Source code
readSwitches Source code
reconIgPhyML Man page Source code
rerootTree Man page Source code
resolveLightChains Man page Source code
resolvePolytomies Man page Source code
runCorrelationTest Man page Source code
scaleBranches Man page Source code
splits_func Source code
stitchRegions Man page Source code
stitchVDJ Man page Source code
testPS Man page Source code
testSC Man page Source code
testSP Man page Source code
treesToPDF Man page Source code
writeFasta Source code
writeLineageFile Man page Source code
dowser documentation built on May 29, 2024, 3:06 a.m.