Files in Gibbons-Lab/mbtools
Provides helper functions for microbiome preprocessing and analysis

.Rbuildignore

.bumpversion.cfg

.github/.gitignore

.github/workflows/main.yml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

Dockerfile

LICENSE

NAMESPACE

R/000_config.R R/RcppExports.R R/align.R R/barcodes.R R/chimera.R R/convert.R R/counting.R R/coverage.R R/data.R R/files.R R/logging.R R/mangling.R R/mbtools-package.R R/mock.R R/nanopore.R R/plates.R R/plots.R R/power_analysis.R R/preprocess.R R/qa.R R/refdb.R R/remove_ref.R R/replication.R R/shotgun.R R/slimm.R R/sra.R R/testing.R R/util.R R/workflow_dada2.R R/workflow_download.R R/workflow_qa.R R/zzz.R README.md

_pkgdown.yml

codecov.yml

data/ERR260132.rda

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man/ERR260132.Rd man/align_long_reads.Rd man/align_short_reads.Rd man/annotate_contigs.Rd man/annotate_silva.Rd man/as.matrix.mbquant.Rd man/as_phyloseq.Rd man/association.Rd man/bin_coverage.Rd man/bracken_to_phyloseq.Rd man/build_lineage.Rd man/combinatorial_association.Rd man/config_align.Rd man/config_association.Rd man/config_chimera.Rd man/config_count.Rd man/config_coverage.Rd man/config_demultiplex.Rd man/config_denoise.Rd man/config_layout.Rd man/config_power.Rd man/config_preprocess.Rd man/config_reference.Rd man/config_rep.Rd man/config_slimm.Rd man/config_sra.Rd man/count_references.Rd man/demultiplex.Rd man/denoise.Rd man/discretize.Rd man/download_bacterial_transcripts.Rd man/download_files.Rd man/download_sra.Rd man/effective_lengths.Rd man/em_count.Rd man/filter_counts.Rd man/filter_reference.Rd man/find_read_files.Rd man/find_taxa.Rd man/layout.Rd man/mbtools.Rd man/merge_transcripts.Rd man/mock_plot.Rd man/mockrobiota.Rd man/mothur_to_dada.Rd man/normalize.Rd man/orlitsky.Rd man/parse_ensembl_id.Rd man/plot_bb_fits.Rd man/plot_counts.Rd man/plot_entropy.Rd man/plot_lengths.Rd man/plot_qualities.Rd man/plot_taxa.Rd man/power_analysis.Rd man/preprocess.Rd man/quality_control.Rd man/quality_profile.Rd man/read_bam.Rd man/read_blast.Rd man/read_length.Rd man/read_slimm.Rd man/read_slimm_coverage.Rd man/reads_to_phyloseq.Rd man/remove_chimeras.Rd man/remove_reference.Rd man/replication_rates.Rd man/select.Rd man/silva_build_taxonomy.Rd man/slimm.Rd man/slimm_files.Rd man/sra_submission.Rd man/standardize.Rd man/taxa_count.Rd man/taxa_metrics.Rd man/taxa_quants.Rd man/types.Rd man/with_classification.Rd

src/.gitignore

src/Makevars

src/RcppExports.cpp

src/em.cpp

Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.

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Gibbons-Lab/mbtools
Provides helper functions for microbiome preprocessing and analysis

Files in Gibbons-Lab/mbtools
Provides helper functions for microbiome preprocessing and analysis

R Package Documentation

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Gibbons-Lab/mbtools Provides helper functions for microbiome preprocessing and analysis

Files in Gibbons-Lab/mbtools Provides helper functions for microbiome preprocessing and analysis

R Package Documentation

Browse R Packages

We want your feedback!

Gibbons-Lab/mbtools
Provides helper functions for microbiome preprocessing and analysis

Files in Gibbons-Lab/mbtools
Provides helper functions for microbiome preprocessing and analysis