Global functions | |
---|---|
DepScores | Source code |
HeatmapCNR | Man page Source code |
addBinInfo | Man page Source code |
addCells | Man page Source code |
addGeneInfo | Man page Source code |
addInfo | Man page Source code |
addPheno | Man page Source code |
addQC | Man page Source code |
add_in_silico_root | Man page Source code |
avg_num_alleles_per_locus | Man page Source code |
binary.X | Man page Source code |
binary.cnr | Man page Source code |
binary.mat | Source code |
binaryDDRC | Man page Source code |
buildCNR | Man page Source code |
callX | Source code |
cbioportal_copy_number_states | Man page Source code |
cbioportal_states_from_integer_cn | Source code |
cbioportal_states_from_log2_ratio | Source code |
chr_breaks | Man page Source code |
chr_colors | Man page Source code |
chromInfo | Man page |
cluster_heterogeneity | Man page Source code |
cluster_representation | Source code |
cnr | Man page |
cnr_data_type | Man page Source code |
convert_coord | Source code |
copynumbers | Man page |
create_chromosome_annotation | Man page Source code |
create_chromosome_annotation_bottom | Man page Source code |
create_chromosome_annotation_left | Man page Source code |
create_chromosome_annotation_right | Man page Source code |
create_chromosome_annotation_top | Man page Source code |
depmap_annotate | Source code |
distCNR | Source code |
dna | Man page |
doKSpectral | Man page Source code |
eps | Source code |
estimate_joint_effects | Man page Source code |
estimate_joint_effects_bin | Source code |
estimate_joint_effects_gene | Source code |
excludeCells | Man page Source code |
expand2genes | Man page Source code |
export_cnr | Man page Source code |
export_pval_igv | Man page Source code |
fisher_tree | Source code |
gac | Man page |
gac-package | Man page |
gene.aggregate | Source code |
genotype_vdj | Man page Source code |
getSubclonesCNR | Source code |
get_alt_counts | Source code |
get_alteration_frequencies | Man page Source code |
get_amp_counts | Source code |
get_bin_frequencies_cn | Source code |
get_cluster_profiles | Man page Source code |
get_del_counts | Source code |
get_gene_details | Source code |
get_gene_frequencies_cn | Source code |
gisticGR | Source code |
gisticRegions | Source code |
grch37.genes.5k | Man page |
hclustCNR | Source code |
hg19_cytoBand | Man page |
histo_logit | Man page Source code |
histo_logit_bin | Source code |
histo_logit_bin_cov | Source code |
histo_logit_cov | Man page Source code |
histo_logit_gene | Source code |
histo_logit_gene_cov | Source code |
kSpectral | Source code |
keepCells | Man page Source code |
list_gene_symbols | Man page Source code |
list_genes_in_region | Man page Source code |
lookupCN | Man page Source code |
mapd | Man page Source code |
mark.genes | Man page Source code |
maximum.percentage | Man page Source code |
merge_lineage_tables | Source code |
mid_chr | Man page Source code |
minimum.intersect | Man page Source code |
nbins | Man page Source code |
ncells | Man page Source code |
ngenes | Man page Source code |
npheno | Man page Source code |
oncoKB_annotate | Source code |
optClust | Man page Source code |
order_bins | Man page Source code |
order_genes | Man page Source code |
parctan | Man page Source code |
percent_genome_amplified | Source code |
percent_genome_gain | Source code |
percent_genome_loss | Source code |
pheno | Man page |
phylo_cnr | Man page Source code |
phylo_ddrc | Man page Source code |
plog | Source code |
plotCL | Man page Source code |
plot_ccp | Man page Source code |
plot_cn_correlations | Man page Source code |
plot_effect | Man page Source code |
plot_frequencies | Man page Source code |
plot_lr | Man page Source code |
plot_sK | Man page Source code |
proportion_of_polymorphic_loci | Man page Source code |
pull_gene_copy_numbers | Man page Source code |
pull_gene_details | Man page Source code |
qc | Man page |
rank_clones | Man page Source code |
rle_ddrc | Man page Source code |
roundCNR | Man page Source code |
run_consensus_clustering | Man page Source code |
scClustCNR | Source code |
seg2bins | Man page Source code |
setBrayClusters | Man page Source code |
setKcc | Man page Source code |
sim_fisherCNR | Source code |
sinkhornKnopp | Source code |
split_cnr | Man page Source code |
subsetCNR | Man page Source code |
subset_ci | Source code |
subset_on_bins | Source code |
subset_on_chrom | Source code |
subset_on_coordinates | Source code |
subset_on_genes | Source code |
summary_cnr | Man page Source code |
symmetricSinkhornKnopp | Source code |
sync_cnr | Man page Source code |
ternary.cnr | Source code |
use_clusters | Source code |
vdjBrayClust | Man page Source code |
vdjHeatmap | Man page Source code |
vdjPlotClust | Man page Source code |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.