API for ichimomo/frasyr
Fisheries Research Agency (FRA) provides the method for calculating sustainable yield (SY) with R
| Global functions | |
|---|---|
| Generation.Time | Man page Source code |
| HCR_default | Source code |
| SRF_BH | Source code |
| SRF_BHS | Source code |
| SRF_CU | Source code |
| SRF_HS | Source code |
| SRF_RI | Source code |
| SRF_SH | Source code |
| abund.extractor | Source code |
| add_age_suffix | Source code |
| adhoc_table | Man page Source code |
| apply_minor_ticks | Man page Source code |
| apply_year_colum | Man page |
| arrange_weight | Man page Source code |
| autocalc_ridgevpa | Man page Source code |
| autocor.plot | Man page Source code |
| average_SR_mat | Man page Source code |
| backward.calc | Source code |
| beta.simulation | Man page |
| boo.vpa | Man page Source code |
| boot.SR | Man page Source code |
| bootSR.ggplot | Man page Source code |
| bootSR.plot | Man page Source code |
| boot_hvpa | Source code |
| boot_hvpa_plot | Source code |
| boot_steepness | Man page Source code |
| bubble_plot | Man page Source code |
| bubble_plot2 | Man page Source code |
| caa.est.mat | Man page Source code |
| caa.est.mat_wrong | Man page Source code |
| calc.StdResid | Man page Source code |
| calc.rel.abund | Man page Source code |
| calc.residAR | Man page Source code |
| calc_Fratio | Man page |
| calc_forward | Source code |
| calc_future_perSPR | Man page |
| calc_perspr | Man page |
| calc_steepness | Man page Source code |
| calculate_all_pm | Man page |
| catch_equation | Source code |
| check.SRdist | Man page Source code |
| check.SRfit | Man page Source code |
| check_MSE_sd0 | Man page |
| check_consistent_w | Man page Source code |
| check_fix_CVoption | Man page |
| colorize_table | Man page |
| compare_MSY | Man page Source code |
| compare_SRfit | Man page Source code |
| compare_eq_stat | Man page Source code |
| compare_future_performance | Man page |
| compare_kobeII | Man page Source code |
| convert_Fvector | Man page |
| convert_SR_tibble | Man page |
| convert_faa_perSPR | Man page Source code |
| convert_future_list_table | Man page |
| convert_future_table | Man page |
| convert_hvpa_tibble | Man page |
| convert_unit | Source code |
| convert_vpa_tibble | Man page |
| corSR | Man page Source code |
| create_dummy_vpa | Man page |
| cv.est | Source code |
| data.handler | Man page Source code |
| data.handler.hay | Man page Source code |
| derive_RP_value | Man page |
| derive_biopar | Man page |
| derive_future_summary | Man page |
| detect_plus_group | Man page |
| do_caaboot_vpa | Man page Source code |
| do_estcheck_vpa | Man page Source code |
| do_jackknife_vpa | Man page Source code |
| do_retrospective_vpa | Man page Source code |
| do_sensitivity_vpa | Man page Source code |
| dp.est | Source code |
| draw_SRline | Man page Source code |
| dyn.msy | Source code |
| est_MSYRP | Man page Source code |
| est_MSYRP_proxy | Source code |
| export_formattable | Man page |
| export_kobeII_table | Man page |
| export_kobeII_tables | Man page |
| export_tables | Man page Source code |
| extract_filename | Source code |
| extract_fmsy | Source code |
| extract_from_kobe_table | Source code |
| extract_value | Source code |
| extract_value.future_new | Source code |
| extract_x | Man page Source code |
| extract_year_from | Source code |
| f.at.age | Source code |
| f.forward.est | Source code |
| ff | Source code |
| fit.SR | Man page Source code |
| fit.SR2 | Source code |
| fit.SR_pen | Man page Source code |
| fit.SR_tol | Man page Source code |
| fit.SRalpha | Source code |
| fit.SRmig | Man page Source code |
| fit.SRregime | Man page Source code |
| fit_draw_SRline | Man page Source code |
| format_beta_table | Man page |
| format_to_old_future | Source code |
| format_x_at_age | Source code |
| forward.calc | Source code |
| fp.forward.est | Source code |
| future_projection | Source code |
| future_vpa | Man page Source code |
| future_vpa_R | Source code |
| geomean | Source code |
| get.SPR | Man page Source code |
| get.SRdata | Man page Source code |
| get.ab.bh | Man page |
| get.stat | Source code |
| get.stat4 | Source code |
| get.trace | Source code |
| get_U | Source code |
| get_performance | Man page |
| get_ssb | Source code |
| get_summary_stat | Source code |
| get_wcatch | Source code |
| ggsave_SH | Man page Source code |
| ggsave_SH_large | Man page Source code |
| give_agename | Man page Source code |
| give_agename.numeric | Source code |
| hira.est | Source code |
| hmm_SR | Man page Source code |
| hretro_est | Man page Source code |
| hretro_plot | Man page Source code |
| hvpa_plot | Man page Source code |
| hvpa_plot2 | Man page Source code |
| ik.est | Source code |
| jackknife.SR | Man page Source code |
| jackknife_plot | Source code |
| jackknife_test | Source code |
| load_data | Source code |
| load_extdata | Source code |
| load_folder | Man page |
| logit | Source code |
| make_RP_table | Man page |
| make_SR_dframe | Man page Source code |
| make_abctable | Man page Source code |
| make_array | Man page Source code |
| make_dat | Source code |
| make_future_data | Man page Source code |
| make_kobeII_table | Man page |
| make_kobe_ratio | Man page |
| make_msytable | Man page Source code |
| make_row | Source code |
| make_stock_table2 | Man page Source code |
| make_summary_table | Source code |
| make_table | Man page Source code |
| make_table.fit.SR | Source code |
| make_table.fit.SRregime | Source code |
| max.age.func | Source code |
| naming_adreport | Source code |
| out.SR | Man page Source code |
| out.vpa | Man page Source code |
| out_vpa2 | Man page Source code |
| pl.ci.dp | Source code |
| plot.SR | Source code |
| plot.future | Source code |
| plot.futures | Source code |
| plot_Fcurrent | Man page Source code |
| plot_Fref | Man page Source code |
| plot_HCR | Man page Source code |
| plot_HCR_by_catch | Man page Source code |
| plot_SR | Man page Source code |
| plot_SR_AReffect | Man page Source code |
| plot_SRaverage | Man page Source code |
| plot_SRdata | Man page Source code |
| plot_SRregime | Man page |
| plot_bias_in_MSE | Source code |
| plot_future_simple | Man page Source code |
| plot_futures | Man page Source code |
| plot_futures_simple | Man page Source code |
| plot_kobe | Source code |
| plot_kobe_gg | Man page |
| plot_resboot_vpa | Man page Source code |
| plot_residual_vpa | Man page Source code |
| plot_residual_vpa2 | Source code |
| plot_sprypr | Man page Source code |
| plot_vpa | Man page Source code |
| plot_waa | Source code |
| plot_worm | Source code |
| plot_yield | Man page Source code |
| plus.group.eq | Source code |
| print.myarray | Source code |
| prof.lik | Man page Source code |
| prof.likSR | Man page Source code |
| profile.likelihood.vpa.B | Source code |
| profile_likelihood.vpa | Man page Source code |
| pull_df_from_list | Man page Source code |
| pull_var_from_kobeII_table | Man page |
| qbs.f | Source code |
| qbs.f2 | Source code |
| rank_HCR | Man page |
| read.vpa | Man page Source code |
| redo_future | Man page |
| ref.F | Man page Source code |
| residual_plot | Man page Source code |
| retrieve_input | Man page Source code |
| retro.est | Man page Source code |
| retro.est2 | Source code |
| return_file_type | Source code |
| safe_call | Man page Source code |
| sample_backward | Man page Source code |
| sel.func | Source code Source code |
| sel_const_check | Source code |
| select_from_tail | Source code |
| sensitivity_plot | Source code |
| sensitivity_test | Source code |
| set_SR_mat | Man page Source code |
| set_lower_limit_catch | Source code |
| set_upper_limit_catch | Source code |
| solv.Feq | Source code |
| solv.Feq.Pope | Source code |
| source_lines | Man page |
| specify.Mesnil.gamma | Man page Source code |
| summary_kobe_table | Man page |
| summary_of_summary | Source code |
| table1 | Man page Source code |
| table2 | Man page Source code |
| table4 | Man page Source code |
| take_interval | Man page |
| test_sd0_future | Man page |
| theme_SH | Man page Source code |
| tmpfunc2 | Source code |
| to_vpa_data | Man page Source code |
| trace_future | Source code |
| tryall_SR | Man page Source code |
| update_maa_mat | Source code |
| update_waa_catch_mat | Source code |
| use_rvpa_tmb | Man page Source code |
| validate_sr | Man page Source code |
| vpa | Man page Source code |
| vpa.core | Source code |
| vpa.core.Pope | Source code |
| vpa.hay | Man page Source code |
| wrap_by_paren | Source code |
| zc_expit | Source code |
| zc_logit | Source code |
| zenki | Source code |
