R/links.q

Defines functions alogitlink sloglink lcsloglink sqrtlink lcalogitlink asinlink logitoffsetlink linkfunvlm nbcanlink cauchitlink logclink extlogitlink powerlink foldsqrtlink fisherzlink rhobitlink igcanlink negreciprocallink negloglink reciprocallink explink probitlink cloglink clogloglink loglogloglink logloglink logitlink negidentitylink identitylink log1plink logofflink logneglink loglink care.exp2 care.exp TypicalVGAMlink TypicalVGAMfamilyFunction as.char.expression multilogitlink ToString

Documented in alogitlink as.char.expression asinlink asinlink asinlink care.exp care.exp2 cauchitlink cauchitlink cloglink clogloglink explink explink extlogitlink extlogitlink fisherzlink fisherzlink foldsqrtlink foldsqrtlink identitylink lcalogitlink lcsloglink linkfunvlm log1plink logclink logclink logitlink logitlink logitoffsetlink loglink loglink logloglink logloglink loglogloglink loglogloglink logneglink logneglink logofflink logofflink multilogitlink multilogitlink nbcanlink negidentitylink negidentitylink negloglink negloglink negreciprocallink negreciprocallink powerlink probitlink reciprocallink reciprocallink rhobitlink rhobitlink sloglink sqrtlink TypicalVGAMfamilyFunction TypicalVGAMlink

# These functions are
# Copyright (C) 1998-2024 T.W. Yee, University of Auckland.
# All rights reserved.

















ToString <- function(x)
  paste(x, collapse = ", ")












 multilogitlink <-
  function(theta,
           refLevel = "(Last)",
           M = NULL,  # stop("argument 'M' not specified"),
           whitespace = FALSE,
           bvalue = NULL,
           inverse = FALSE, deriv = 0,
           all.derivs = FALSE,
           short = TRUE, tag = FALSE) {




  fillerChar <- ifelse(whitespace, " ", "")

  if (length(refLevel) != 1)
    stop("the length of argument 'refLevel' must be one")

  if (is.character(refLevel)) {
    if (refLevel != "(Last)")
      stop('if a character, refLevel must be "(Last)"')
    refLevel <- -1
  } else
  if (is.factor(refLevel)) {
    if (is.ordered(refLevel))
      warning("argument 'refLevel' is from an ordered factor")
    refLevel <- as.character(refLevel) == levels(refLevel)
    refLevel <- (seq_along(refLevel))[refLevel]
    if (!is.Numeric(refLevel, length.arg = 1,
                    integer.valued = TRUE, positive = TRUE))
      stop("could not coerce 'refLevel' into a single ",
           "positive integer")
  } else
  if (!is.Numeric(refLevel, length.arg = 1,
                  positive = TRUE, integer.valued = TRUE))
    stop("'refLevel' must be a single positive integer")




  if (is.character(theta)) {
    is.M <- is.finite(M) && is.numeric(M)
    string <- if (short) {
        paste0("multilogitlink(", theta, ")")
    } else {
        theta <- as.char.expression(theta)

         if (refLevel < 0) {
           ifelse(whitespace,
             paste0("log(", theta, "[,j] / ",
                   theta, "[,",
                   ifelse(is.M, M+1, "M+1"),
                   "]), j = 1:",
                   ifelse(is.M, M, "M")),
             paste0("log(", theta, "[,j]/",
                   theta, "[,",
                   ifelse(is.M, M+1, "M+1"),
                   "]), j=1:",
                   ifelse(is.M, M, "M")))
         } else {
             if (refLevel == 1) {
               paste0("log(", theta, "[,", "j]",
                   fillerChar, "/", fillerChar,
                     "", theta, "[,", refLevel, "]), j",
                     fillerChar, "=", fillerChar, "2:",
                   ifelse(is.M, (M+1), "(M+1)"))
             } else {
               paste0("log(", theta, "[,", "j]", fillerChar, "/",
                     "", theta, "[,", refLevel, "]), j",
                     fillerChar, "=", fillerChar,
                     "c(1:", refLevel-1, ",",
                     fillerChar,
                     refLevel+1, ":",
                     ifelse(is.M, (M+1), "(M+1)"), ")")
             }
         }
    }
    if (tag)
      string <- paste("Multinomial logit link:", string)
    return(string)
  }



  M.orig <- M
  M <- NCOL(theta) - !(inverse && deriv == 0)
  if (M < 1)
    ifelse(inverse,
       stop("argument 'eta' should have at least one column"),
       stop("argument 'theta' should have at least two columns"))
  if (is.numeric(M.orig) && M != M.orig) {
    warning("argument 'M' does not seem right but using it")
    M <- M.orig
  }
  if (is.numeric(refLevel) && refLevel > M + 1)
    stop("bad input for argument 'refLevel'")



  if (!inverse && length(bvalue))
    theta[theta <= 0.0] <- bvalue
  if (!inverse && length(bvalue))
    theta[theta >= 1.0] <- 1 - bvalue


  foo <- function(eta, refLevel = -1, M) {
    use.refLevel <- if ( refLevel < 0)
                    M+1 else refLevel  # unneeded
    phat <- if ((refLevel < 0) || (refLevel == M+1)) {
      care.exp2(cbind(eta, 0.0))
    } else if ( refLevel == 1) {
      care.exp2(cbind(0.0, eta))
    } else {
      etamat <- cbind(eta[, 1:( refLevel - 1), drop = FALSE],
                      0.0,
                      eta[, ( refLevel ):M, drop = FALSE])
      care.exp2(etamat)
    }

    rSp <- rowSums(phat)
    ans <- phat / rSp
    colnames(ans) <- NULL  # Safest for now
    ans
  }  # foo



  use.refLevel <- if ( refLevel < 0) M+1 else refLevel

  if (inverse) {
    use.refLevel <- if (refLevel < 0) ncol(theta) else refLevel
    switch(as.character(deriv),
      "0" = {
              foo(theta, refLevel,  # refLevel, not use.refLevel
                  M = M)
            },
      "1" = if (all.derivs) {
              index <- iam(NA, NA, M = M, both = TRUE, diag = TRUE)
              theta <- theta[, -use.refLevel, drop = FALSE]  # n x M
              wz <- -theta[, index$row, drop = FALSE] *
                     theta[, index$col, drop = FALSE]
              wz[, 1:M] <- wz[, 1:M] + theta
              wz
            } else {
              theta[, -use.refLevel,  drop = FALSE] *
              theta[,  use.refLevel] / (
              theta[, -use.refLevel,  drop = FALSE] +
              theta[,  use.refLevel])
            },
      "2" = (theta*(1-theta)*(1-2*theta))[, -use.refLevel,
                                          drop = FALSE],
      "3" = {
              temp1 <- theta * (1 - theta)
             (temp1 * (1 - 6 * temp1))[, -use.refLevel,
                                       drop = FALSE]
            },
      stop("argument 'deriv' unmatched"))
  } else {  # Not inverse below here ,,,,,,,,,,,,,,,,,,,

    switch(as.character(deriv),
           "0" = {
      ans <- if (refLevel < 0) {
        log(theta[, -ncol(theta), drop = FALSE] / (
            theta[, ncol(theta)]))
      } else {
        use.refLevel <- if (refLevel < 0)
                          ncol(theta) else refLevel
        log(theta[, -( use.refLevel ), drop = FALSE] / (
            theta[, use.refLevel ]))
      }

      colnames(ans) <- NULL  # Safest for now
      ans
      },
      "1" = care.exp(-log(theta) - log1p(-theta)),
      "2" = (2 * theta - 1) / care.exp(2*log(theta) +
                                       2*log1p(-theta)),
      "3" = {
        temp1 <- care.exp(log(theta) + log1p(-theta))
        2 * (1 - 3 * temp1) / temp1^3
      },
      stop("argument 'deriv' unmatched"))
  }
}  # multilogitlink









 as.char.expression <- function(x) {
  answer <- x
  for (i in length(x)) {
    charvec <- substring(x[i], 1:nchar(x[i]), 1:nchar(x[i]))
    if (!all(is.element(charvec,
                        c(letters,
                          LETTERS,
                          as.character(0:9), ".", "_"))))
      answer[i] <- paste0("(", x[i], ")")
  }
  answer
}



if (FALSE) {
  as.char.expression("a")
  as.char.expression("a+b")
  as.char.expression(c("a", "a+b"))
}






 TypicalVGAMfamilyFunction <-
  function(lsigma = "loglink",
           isigma = NULL,
           zero = NULL,
           gsigma = exp(-5:5),
           eq.mean = FALSE,
           parallel = TRUE,
           imethod = 1,
           vfl = FALSE, Form2 = NULL,
           type.fitted = c("mean", "quantiles", "Qlink",
                           "pobs0", "pstr0", "onempstr0"),
           percentiles = c(25, 50, 75),
           probs.x = c(0.15, 0.85),
           probs.y = c(0.25, 0.50, 0.75),
           multiple.responses = FALSE, earg.link = FALSE,
           ishrinkage = 0.95, nointercept = NULL,
           whitespace = FALSE, bred = FALSE, lss = TRUE,
           oim = FALSE, nsimEIM = 100, byrow.arg = FALSE,
           link.list = list("(Default)" = "identitylink",
                            x2          = "loglink",
                            x3          = "logofflink",
                            x4          = "multilogitlink",
                            x5          = "multilogitlink"),
           earg.list = list("(Default)" = list(),
                            x2          = list(),
                            x3          = list(offset = -1),
                            x4          = list(),
                            x5          = list()),
           Thresh = NULL, nrfs = 1) {
  NULL
}


TypicalVGAMlink <-
  function(theta,
           someParameter = 0,
      bvalue = NULL,  # .Machine$double.xmin
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  NULL
}






care.exp <-
  function(x,
           thresh = -log( sqrt( .Machine$double.xmin ) )) {


  x[x >   thresh]  <-  thresh
  x[x < (-thresh)] <- -thresh
  exp(x)
}



care.exp2 <- function(x) {
  if (NCOL(x) == 1)
    x <- cbind(x)
  exp(x - x[cbind(1:NROW(x), max.col(x))])
}










 loglink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.xmin
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {


  if (is.character(theta)) {
    string <- if (short)
        paste0("loglink(",  theta, ")") else
        paste0("log(",  theta, ")")
    if (tag)
      string <- paste("Log:", string)
    return(string)
  }

  if (!inverse && length(bvalue))
    theta[theta <= 0.0] <- bvalue

  if (inverse) {
    switch(as.character(deriv),
           "0" = exp(theta),
           "1" = theta,
           "2" = theta,
           "3" = theta,
           "4" = theta,
           "5" = theta,
           "6" = theta,
           "7" = theta,
           "8" = theta,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
       "0" = log(theta),
       "1" =     1 / theta,
       "2" =    -1 / theta^2,
       "3" =     2 / theta^3,
       "4" =    -6 / theta^4,
       "5" =    24 / theta^5,
       "6" =  -120 / theta^6,
       "7" =   720 / theta^7,
       "8" = -5040 / theta^8,
       stop("argument 'deriv' unmatched"))
  }
}  # loglink






 logneglink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.xmin
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {


  if (is.character(theta)) {
    string <- if (short)
        paste0("logneglink(",  theta, ")") else
        paste0("log(-(",  theta, "))")
    if (tag)
      string <- paste("Log negative:", string)
    return(string)
  }

  if (!inverse && length(bvalue))
    theta[theta <= 0.0] <- bvalue

  if (inverse) {
    switch(as.character(deriv),
           "0" = -exp(theta),
           "1" = theta,
           "2" = theta,
           "3" = theta,
           "4" = theta,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = log(-theta),
           "1" =  1 / theta,
           "2" = -1 / theta^2,
           "3" =  2 / theta^3,
           "4" = -6 / theta^4,
           stop("argument 'deriv' unmatched"))
  }
}  # logneglink






 logofflink <-
  function(theta,
           offset = 0,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {

  if (!is.Numeric(offset))
    stop("bad input for argument 'offset'")

  if (is.character(theta)) {
    string <- if (short)
      paste0("logofflink(", theta,
            ", offset = ", as.character(offset),
            ")") else
      paste0("log(",
            as.character(offset),
            "+",
            as.char.expression(theta),
            ")")
    if (tag)
      string <- paste("Log with offset:", string)
    return(string)
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = exp(theta) - offset,
           "1" = theta + offset,
           "2" = theta + offset,
           "3" = theta + offset,
           "4" = theta + offset,
           "5" = theta + offset,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = log(theta + offset),
           "1" =  1 / (theta + offset),
           "2" = -1 / (theta + offset)^2,
           "3" =  2 / (theta + offset)^3,
           "4" = -6 / (theta + offset)^4,
           "5" = 24 / (theta + offset)^4,
           stop("argument 'deriv' unmatched"))
  }
}  # logofflink








 log1plink <-
  function(theta,
           offset = 0,  # To be left alone.
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {

  if (!is.Numeric(offset))
    stop("bad input for argument 'offset'")
  if (!all(offset == 0))
    stop("'offset' should be left alone because ",
         "it is implicitly unity. ",
         "Use logofflink() instead?")

  if (is.character(theta)) {
    string <- if (short)
      paste0("log1plink(", theta, ")") else
      paste0("log(1+", as.char.expression(theta), ")")
    if (tag)
      string <- paste("Log with unit offset:", string)
    return(string)
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = expm1(theta),
           "1" = theta + 1,
           "2" = theta + 1,
           "3" = theta + 1,
           "4" = theta + 1,
           "5" = theta + 1,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = log1p(theta),
           "1" =  1 / (theta + 1),
           "2" = -1 / (theta + 1)^2,
           "3" =  2 / (theta + 1)^3,
           "4" = -6 / (theta + 1)^4,
           "5" = 24 / (theta + 1)^5,
           stop("argument 'deriv' unmatched"))
  }
}  # log1plink






 identitylink <-
  function(theta,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {


  if (is.character(theta)) {
    string <- theta
    if (tag)
      string <- paste("Identity:", string)
    return(string)
  }

  switch(as.character(deriv),
         "0" = theta,
         "1" = theta * 0 + 1,
         "2" = theta * 0,  # zz Does not handle Inf and -Inf
         "3" = theta * 0,  # zz Does not handle Inf and -Inf
         "4" = theta * 0,  # zz Does not handle Inf and -Inf
         "5" = theta * 0,  # zz Does not handle Inf and -Inf
         stop("argument 'deriv' unmatched"))
}  # identitylink






 negidentitylink <-
  function(theta,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    theta <- as.char.expression(theta)
    string <- paste0("-", theta)
    if (tag)
      string <- paste("Negative-identity:", string)
    return(string)
  }

  switch(as.character(deriv),
         "0" = -theta,
         "1" = theta * 0 - 1,
         "2" = theta * 0,  # zz Does not handle Inf and -Inf
         "3" = theta * 0,  # zz Does not handle Inf and -Inf
         "4" = theta * 0,  # zz Does not handle Inf and -Inf
         "5" = theta * 0,  # zz Does not handle Inf and -Inf
         stop("argument 'deriv' unmatched"))
}  # negidentitylink






 logitlink <-
  function(theta,
           bvalue = NULL,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("logitlink(",  # "logit(",
               theta,
              ")") else
        paste0("log(",
              as.char.expression(theta),
              "/(1-",
              as.char.expression(theta),
              "))")
    if (tag)
      string <- paste("Logit:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }
  if (inverse) {
    switch(as.character(deriv),
   "0" = plogis(theta),
   "1" =    1 / Recall(theta = theta,
                bvalue = bvalue,
                inverse = FALSE,
                deriv = deriv),
   "2" = theta * (1 - theta) * (1 - 2 * theta),
   "3" = (1 - 6 * theta * (1 - theta)) *
          theta * (1 - theta),
        "4" = {
  iD1 <- Recall(theta, deriv = 1, inverse = TRUE)
  iD2 <- Recall(theta, deriv = 2, inverse = TRUE)
  iD3 <- Recall(theta, deriv = 3, inverse = TRUE)
  DD1 <- Recall(theta, deriv = 1, inverse = FALSE)
  DD2 <- Recall(theta, deriv = 2, inverse = FALSE)
  DD3 <- Recall(theta, deriv = 3, inverse = FALSE)
  DD4 <- Recall(theta, deriv = 4, inverse = FALSE)
  (iD1^3) * (15 * iD1 * iD2 * (DD2^2) +
              6 * (iD1^3) * DD2 * DD3 -
              4 * iD2 * DD3 - (iD1^2) * DD4)
        },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
     "0" = qlogis(theta),
     "1" = 1 / (theta * (1 - theta)),
  "2" = (2 * theta - 1) / (theta * (1 - theta))^2,
  "3" = 2 * (1 - 3 * theta *
             (1 - theta)) / (theta * (1 - theta))^3,
     "4" = -6 * (1 - 2 * theta) *
          (1 - 2 * theta *
          (1 - theta)) / (theta * (1 - theta))^4,
     stop("argument 'deriv' unmatched"))
  }
}  # logitlink






 logloglink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("logloglink(",  theta, ")") else
        paste0("log(log(", theta, "))")
    if (tag)
      string <- paste("Log-Log:", string)
    return(string)
  }

  if (!inverse && length(bvalue))
    theta[theta <= 1.0] <- bvalue

  if (inverse) {
    switch(as.character(deriv),
           "0" = exp(exp(theta)),
           "1" = (theta * log(theta)),
           "2" = { junk <- log(theta)
                   theta  * junk * (1 + junk) },
           "3" = { Junk3 <- theta * log(theta)
                   Junk3 * ((1 + log(theta))^2 + Junk3 / theta)
      },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = log(log(theta)),
           "1" = 1 / (theta * log(theta)),
           "2" = { junk <- log(theta)
                   -(1 + junk) / (theta * junk)^2
           },
           "3" = { Junk3 <- theta * log(theta)
           (2 * (1 + log(theta))^2 / Junk3 - 1 / theta) / Junk3^2
                 },
           stop("argument 'deriv' unmatched"))
  }
}  # logloglink






 loglogloglink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("loglogloglink(",  theta, ")") else
        paste0("log(log(log(", theta, ")))")
    if (tag)
      string <- paste("Log-Log-Log:", string)
    return(string)
  }

  if (!inverse && length(bvalue))
    theta[theta <= exp(1.0)] <- bvalue

  if (inverse) {
    switch(as.character(deriv),
           "0" = exp(exp(exp(theta))),
           "1" = theta * log(theta) * log(log(theta)),
           "2" = { junk <- log(theta)
                   logjunk <- log(junk)
                   theta * junk * logjunk * (1 + logjunk * (1 + junk))
                 },
           "3" = { junk <- log(theta)
                   logjunk <- log(junk)
                   theta * junk^2 * logjunk^3  * (
                   3 + junk + 1 / junk + 3 / logjunk +
                   3 / (junk * logjunk) +
                   1 / (junk * logjunk^2))
      },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = log(log(log(theta))),
           "1" = 1 / (theta * log(theta) * log(log(theta))),
           "2" = { junk <- log(theta)
                   logjunk <- log(junk)
                   (-1 / (theta^2 * junk * logjunk)) *
                   (1 + (1 / junk) * (1 + 1 / logjunk))
           },
           "3" = { junk <- log(theta)
                   logjunk <- log(junk)
                   (3 + 2 * junk + 2 / junk +
                   3 / logjunk +
                   3 / (junk * logjunk) +
                   2 / (junk * logjunk^2)) / (
                   theta^3 * junk^2 * logjunk)
                 },
           stop("argument 'deriv' unmatched"))
  }
}  # loglogloglink









 clogloglink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("clogloglink(", theta, ")") else
        paste0("log(-log(1-",
              as.char.expression(theta), "))")
    if (tag)
      string <- paste("Complementary log-log:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }

  if (inverse) {
    switch(as.character(deriv),
    "0" = { -expm1(-exp(theta)) },
    "1" = {
        ans5 <- (-(1 - theta) * log1p(-theta))
        ans5[1 - theta == 0] <- 0  # 20210522; limit
        ans5
    },
    "2" = {
        junk <- log1p(-theta)
        ans6 <- -(1 - theta) * (1 + junk) * junk
        ans6[1 - theta == 0] <- 0  # 20210522; limit
        ans6
     },
     "3" = {
         junk <- log1p(-theta)
         Junk2 <- (1 - theta) * junk
         ans7 <- -Junk2 * (Junk2 / (1 - theta) +
                           (1 + junk)^2)
         ans7[1 - theta == 0] <- 0  # 20210524; limit
         ans7
      },
      stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
    "0" = log(-log1p(-theta)),
    "1" = {
        ans5 <- -1 / ((1 - theta) * log1p(-theta))
        ans5[1 - theta == 0] <- Inf  # 20210522; limit
        ans5
    },
    "2" = {
        junk <- log1p(-theta)
        ans6 <- -(1 + junk) / ((1-theta) * junk)^2
        ans6[1 - theta == 0] <- Inf  # 20210522; limit
        ans6
     },
    "3" = {
        junk <- log1p(-theta)
        Junk3 <- (1 - theta) * junk
        ans7 <- (1 / (1 - theta) -
                2 * (1 + junk)^2 / Junk3) / Junk3^2
        ans7[1 - theta == 0] <- Inf  # 20210524; limit
        ans7
     },
     stop("argument 'deriv' unmatched"))
  }
}  # clogloglink








 cloglink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("cloglink(", theta, ")") else
        paste0("-log(1-",
              as.char.expression(theta), ")")
    if (tag)
      string <- paste("Complementary log:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }

  if (inverse) {
    switch(as.character(deriv),
    "0" = -expm1(-theta),
    "1" = 1 - theta,
    "2" = theta - 1,
    "3" = 1 - theta,
    "4" = theta - 1,
    "5" = 1 - theta,
    stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
    "0" = -log1p(-theta),
    "1" = { ans5 <- 1 / (1 - theta)
            ans5[1 - theta == 0] <- Inf  # limit
            ans5 },
    "2" = { ans6 <- 1 / (1 - theta)^2
            ans6[1 - theta == 0] <- Inf  # limit
            ans6 },
    "3" = { ans7 <- 2 / (1 - theta)^3
            ans7[1 - theta == 0] <- Inf  # limit
            ans7 },
    "4" = { ans9 <- 6 / (1 - theta)^4
            ans9[1 - theta == 0] <- Inf  # limit
            ans9 },
    "5" = { ans5 <- 24 / (1 - theta)^5
            ans5[1 - theta == 0] <- Inf  # limit
            ans5 },
     stop("argument 'deriv' unmatched"))
  }
}  # cloglink






 probitlink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("probitlink(", theta, ")") else
        paste0("qnorm(",  theta, ")")
    if (tag)
      string <- paste("Probit:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1 - bvalue
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = {
                   ans <- pnorm(theta)
                   if (is.matrix(theta))
                     dim(ans) <- dim(theta)
                   ans
                  },
           "1" = {  # 1st deriv
      1 / Recall(theta = theta,
                 bvalue = bvalue,
                 inverse = FALSE, deriv = deriv)
         },
           "2" = {  # 2nd deriv
        Junk2 <- qnorm(theta)
        ans6 <- -Junk2 * dnorm(Junk2)
        ans6[1-theta == 0] <- 0  # 20210525; limit
        if (is.vector(theta)) ans6 else
        if (is.matrix(theta)) {
          dim(ans6) <- dim(theta)
          ans6
        } else {
          warning("can only handle vectors and ",
             "matrices; converting to vector")
          ans6
        }
      },
           "3" = {
             Junk3 <- qnorm(theta)
             junk <- dnorm(Junk3)
             ans7 <- junk * (Junk3^2 - 1)
        ans7[1-theta == 0] <- 0  # 20210525 limit
             ans7
           },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = {
        ans <- qnorm(theta)
        if (is.matrix(theta))
          dim(ans) <- dim(theta)
        ans
     },
           "1" = {  # 1st deriv
       if (is.matrix(theta)) {
         ans <- 1 / dnorm(qnorm(theta))
         dim(ans) <- dim(theta)
         ans
       } else {
         1 / dnorm(qnorm(as.vector(theta)))
       }
      },
           "2" = {  # 2nd deriv
        Junk2 <- qnorm(theta)

        ans <- Junk2 / (dnorm(Junk2))^2

        if (is.vector(theta)) ans else
        if (is.matrix(theta)) {
          dim(ans) <- dim(theta)
          ans
        } else {
          warning("can only handle vectors and matrices;",
                  " converting to vector")
          ans
        }
      },
           "3" = {
             Junk3 <- qnorm(theta)
             junk <- dnorm(Junk3)
             (1 + 2 * Junk3^2) / junk^3
           },
           stop("argument 'deriv' unmatched"))
  }
}  # probitlink







 explink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("explink(", theta, ")") else
        paste0("exp(", theta, ")")
    if (tag)
      string <- paste("Exp:", string)
    return(string)
  }

  if (!inverse && length(bvalue))
    theta[theta <= 0.0] <- bvalue
  if (inverse) {
    switch(as.character(deriv),
           "0" = log(theta),
           "1" =      exp(    -theta),
           "2" = -    exp(-2 * theta),  # 20170610 Fixes up a bug
           "3" =  2 * exp(-3 * theta),
           "4" = -6 * exp(-4 * theta),
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = exp(theta),
           "1" = exp(theta),
           "2" = exp(theta), 
           "3" = exp(theta),
           "4" = exp(theta),
           stop("argument 'deriv' unmatched"))
  }
}  # explink






 reciprocallink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    theta <- as.char.expression(theta)
    string <- paste0("1/", theta)
    if (tag)
      string <- paste("Reciprocal:", string)
    return(string)
  }

  if (!inverse && length(bvalue))
    theta[theta == 0.0] <- bvalue

  if (inverse) {
    switch(as.character(deriv),
           "0" = 1 / theta,
           "1" = -   theta^2,
           "2" =  2 * theta^3,
           "3" = -6 * theta^4,
           "4" = 24 * theta^5,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" =  1 / theta,
           "1" = -1 / theta^2,
           "2" =  2 / theta^3,
           "3" = -6 / theta^4,
           "4" = 24 / theta^5,
           stop("argument 'deriv' unmatched"))
  }
}  # reciprocallink






 negloglink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
      string <- if (short)
          paste0("negloglink(", theta, ")") else
          paste0("-log(",  theta, ")")
      if (tag)
        string <- paste("Negative log:", string)
      return(string)
  }


  if (!inverse && length(bvalue))
    theta[theta <= 0.0] <- bvalue
  if (inverse) {
    switch(as.character(deriv),
           "0" = exp(-theta),
           "1" = -theta,
           "2" =  theta,
           "3" = -theta,
           "4" =  theta,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = -log(theta),
           "1" = -1/theta,
           "2" =  1/theta^2,
           "3" = -2/theta^3,
           "4" =  6/theta^4,
           stop("argument 'deriv' unmatched"))
  }
}  # negloglink






 negreciprocallink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE,
           deriv = 0, short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    theta <- as.char.expression(theta)
    string <- paste0("-1/", theta)
    if (tag)
      string <- paste("Negative reciprocal:", string)
    return(string)
  }


  if (!inverse && length(bvalue))
    theta[theta == 0.0] <- bvalue

  if (inverse) {
    switch(as.character(deriv),
           "0" = -1 / theta,
           "1" =      theta^2,
           "2" =  2 * theta^3,
           "3" =  6 * theta^4,
           "4" = 24 * theta^5,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" =  -1 / theta,
           "1" =   1 / theta^2,
           "2" =  -2 / theta^3,
           "3" =   6 / theta^4,
           "4" = -24 / theta^5,
           stop("argument 'deriv' unmatched"))
  }
}  # negreciprocallink






  igcanlink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.eps
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {

  if (is.character(theta)) {
    theta <- as.char.expression(theta)
    string <- paste0("-1/", theta)
    if (tag)
      string <- paste("Negative inverse:", string)
    return(string)
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" =  1 / sqrt(-2*theta),
           "1" =      theta^3,
           "2" =  3 * theta^5, 
           "3" = 15 * theta^7, 
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" =  -1 / (2 * theta^2),
           "1" =   1 / theta^3,
           "2" =  -3 / theta^4,
           "3" =  12 / theta^5,
           "4" = -60 / theta^6,
           stop("argument 'deriv' unmatched"))
  }
}  # igcanlink






 rhobitlink <-
  function(theta,
           bminvalue = NULL,
           bmaxvalue = NULL,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("rhobitlink(", theta, ")") else
        paste0("log((1+",
              as.char.expression(theta),
              ")/(1-",
              as.char.expression(theta), "))")
    if (tag)
      string <- paste("Rhobit:", string)
    return(string)
  }

  if (!inverse) {
    if (length(bminvalue))
      theta[theta <= -1.0] <- bminvalue
    if (length(bmaxvalue))
      theta[theta >=  1.0] <- bmaxvalue
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = {  # junk <- exp(theta)
             expm1(theta) / (exp(theta) + 1.0) },
           "1" = (1 - theta^2) / 2,
       "2" = (-theta / 2) * (1 - theta^2),
       "3" = (3 * theta^2 - 1) * (1 - theta^2) / 4,
             stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = {
                 log1p(theta) - log1p(-theta) },
           "1" = 2 / (1 - theta^2),
           "2" = (4*theta) / (1 - theta^2)^2,
           "3" = 4 * (1 + 3 * theta^2) / (1 - theta^2)^3,
           stop("argument 'deriv' unmatched"))
  }
}  # rhobitlink






 fisherzlink <-
  function(theta,
           bminvalue = NULL,
           bmaxvalue = NULL,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("fisherzlink(", theta, ")") else
        paste0("(1/2) * log((1+",
              as.char.expression(theta),
              ")/(1-",
              as.char.expression(theta), "))")
    if (tag)
      string <- paste("Fisher's Z transformation:", string)
    return(string)
  }

  if (!inverse) {
     if (length(bminvalue)) theta[theta <= -1.0] <- bminvalue
     if (length(bmaxvalue)) theta[theta >=  1.0] <- bmaxvalue
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = tanh(theta),
           "1" = 1 - theta^2,
           "2" = 2 * (-theta) * (1 - theta^2),
           "3" = (3 * theta^2 - 1) * (1 - theta^2) * 2,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = atanh(theta),
           "1" = 1 / (1 - theta^2),
           "2" = (2*theta) / (1 - theta^2)^2,
           "3" = 2 * (1 + 3 * theta^2) / (1 - theta^2)^3,
           stop("argument 'deriv' unmatched"))
    }
}  # fisherzlink







 foldsqrtlink <-
  function(theta,  #  = NA  , = NULL,
           min = 0, max = 1, mux = sqrt(2),
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (!is.Numeric(min, length.arg = 1))
    stop("bad input for 'min' component")
  if (!is.Numeric(max, length.arg = 1))
    stop("bad input for 'max' component")
  if (!is.Numeric(mux, length.arg = 1,
                  positive = TRUE))
    stop("bad input for 'mux' component")
  if (min >= max)
    stop("'min' >= 'max' is not allowed")

  if (is.character(theta)) {
    string <- if (short)
      paste0("foldsqrtlink(", theta, ")") else {
    theta <- as.char.expression(theta)
      if (abs(mux-sqrt(2)) < 1.0e-10)
        paste0("sqrt(2*", theta,
               ") - sqrt(2*(1-", theta, "))") else
        paste0(as.character(mux),
               " * (sqrt(", theta, "-", min,
               ") - sqrt(",
            max, "-", theta, "))")
    }
    if (tag)
        string <- paste("Folded square root:",
                        string)
    return(string)
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = {
      mid <- (min + max) / 2
      boundary <- mux * sqrt(max - min)
      temp <- pmax(0, (theta/mux)^2 *
                  (2*(max-min) - (theta/mux)^2))
      ans <- theta
      if (any(ind5 <- theta <  0))
        ans[ind5] <- mid - 0.5 * sqrt(temp[ind5])
      if (any(ind5 <- theta >= 0))
        ans[ind5] <- mid + 0.5 * sqrt(temp[ind5])
      ans[theta < -boundary] <- NA
      ans[theta >  boundary] <- NA
      ans
        },
      "1" = (2 / mux ) / (1/sqrt(theta-min) +
                          1/sqrt(max-theta)),
      "2" = stop("use the chain rule formula",
                 " to obtain this"),
      "3" = {  # 3rd deriv
        stop("3rd deriv not yet implemented")
      },
      stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = mux * (sqrt(theta-min) -
                        sqrt(max-theta)),
           "1" = (1/sqrt(theta-min) +
                  1/sqrt(max-theta)) * mux / 2,
        "2" = -(mux / 4) * ((theta-min)^(-3/2) -
                            (max-theta)^(-3/2)),
        "3" = { #3rd deriv
      stop("3rd deriv not yet implemented")
           },
           stop("argument 'deriv' unmatched"))
  }
}  # foldsqrtlink






 powerlink <-
  function(theta,
           power = 1,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
    exponent <- power
    if (exponent == 0)
      stop("use the 'loge' link")

  if (is.character(theta)) {
    string <- if (short)
        paste0("powerlink(", theta, ", power = ",
               as.character(exponent), ")") else
        paste0(as.char.expression(theta),
               "^(", as.character(exponent), ")")
    if (tag)
      string <- paste("Power link:", string)
    return(string)
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = theta^(1/exponent),
           "1" = (theta^(1-exponent)) / exponent,
           "2" = ((1-exponent) / exponent^2) *
               (theta^(1 - 2*exponent)),
      "3" = { #3rd deriv
      stop("3rd deriv not yet implemented")
      },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = theta^exponent,
           "1" = exponent / (theta^(1-exponent)),
      "2" = exponent * (exponent-1) * (theta^(exponent-2)),
      "3" = { #3rd deriv
      stop("3rd deriv not yet implemented")
      },
           stop("argument 'deriv' unmatched"))
  }
}  # powerlink







 extlogitlink <-
  function(theta,
           min = 0, max = 1,
           bminvalue = NULL,
           bmaxvalue = NULL,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {

    A <- min
    B <- max
if (!inverse && length(bminvalue)) theta[theta <= A] <- bminvalue
if (!inverse && length(bmaxvalue)) theta[theta >= B] <- bmaxvalue



  if (is.character(theta)) {
    string <- if (short) {
      if (A != 0 || B != 1)
        paste0("extlogitlink(", theta,
               ", min = ", A,
               ", max = ", B, ")") else
        paste0("extlogitlink(", theta, ")")
    } else {
      paste0("log((",
             as.char.expression(theta),
             "-min)/(max-",
             as.char.expression(theta), "))")
    }
    if (tag)
      string <- paste("Extended logit:", string)
    return(string)
  }

  if (inverse) {
    switch(as.character(deriv),
           "0" = {
           junk <- care.exp(theta)
           (A + B * junk) / (1.0 + junk) },
           "1" = ((theta - A) * (B - theta)) / (B-A),
           "2" = (A + B - 2 * theta) * (theta - A) *
                 (B - theta) / (B-A)^2,
      "3" = { #3rd deriv
           (theta - A) * (B - theta) * ((2 * theta - A - B)^2 -
       2 * (theta - A) * (B - theta)) / (B - A)^3
      },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = {
           log((theta - A)/(B - theta))},
           "1" = (B-A) / ((theta - A) * (B - theta)),
           "2" = ((2 * theta - A - B) * (B-A)) / ((theta - A) *
                 (B - theta))^2,
      "3" = { #3rd deriv
           (B - A) * (2 / ((theta - A) * (B - theta))^2) *
      (1 + (2 * theta - A - B)^2 / ((theta - A) * (B - theta)))
      },
           stop("argument 'deriv' unmatched"))
  }
}  # extlogitlink






 logclink <-
  function(theta,
           bvalue = NULL,  # .Machine$double.xmin
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("logclink(", theta, ")") else {
        theta <- as.char.expression(theta)
        paste0("log(1-", theta, ")")
    }
    if (tag)
      string <- paste("Log Complementary:", string)
    return(string)
  }


  if (!inverse && length(bvalue)) {
    theta[theta >= 1.0] <- bvalue;
  }
  if (inverse) {
    switch(as.character(deriv),
           "0" = -expm1(theta),
           "1" = theta - 1,
           "2" = theta - 1,
           "3" = theta - 1,
           "4" = theta - 1,
           "5" = theta - 1,
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = log1p(-theta),
           "1" =  -1 / (1 - theta),
           "2" =  -1 / (1 - theta)^2,
           "3" =  -2 / (1 - theta)^3,
           "4" =  -6 / (1 - theta)^4,
           "5" = -24 / (1 - theta)^5,
           stop("argument 'deriv' unmatched"))
  }
}  # logclink






 cauchitlink <-
  function(theta,
           bvalue = .Machine$double.eps,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("cauchitlink(", theta, ")") else {
        theta <- as.char.expression(theta)
        paste0("tan(pi*(", theta, "-0.5))")
    }
    if (tag)
      string <- paste("Cauchit:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }
  if (inverse) {
    switch(as.character(deriv),
           "0" = 0.5 + atan(theta) / pi,
           "1" = (cos(pi * (theta-0.5)))^2  / pi,
           "2" = {
             temp2 <- cos(pi * (theta-0.5))
             temp4 <- sin(pi * (theta-0.5))
             -2 * temp4 * temp2^3 / pi
           },
           "3" = {
             temp2 <- cos(pi * (theta-0.5))
             temp5 <- tan(pi * (theta-0.5))
             2 * temp2^6 * (3 * temp5^2 - 1) / pi
           },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = tan(pi * (theta-0.5)),
           "1" = pi / (cos(pi * (theta-0.5)))^2,
           "2" =  {
           temp2 <- cos(pi * (theta-0.5))
           temp3 <- tan(pi * (theta-0.5))
           (temp3 * 2 * pi^2) / temp2^2
         },
           "3" =  {
           temp2 <- cos(pi * (theta-0.5))
           temp3 <- tan(pi * (theta-0.5))
           2 * pi^3 * (1 + 3 * temp3^2) / temp2^2
         },
           stop("argument 'deriv' unmatched"))
  }
}  # cauchitlink







 nbcanlink <-
  function(theta,
           size = NULL,
           wrt.param = NULL,
           bvalue = NULL,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
      lastchars1 <-
          substr(theta, nchar(theta),
                 nchar(theta))
      lastchars2 <-
          ifelse(nchar(theta) > 1,
                 substr(theta, nchar(theta) - 1,
                        nchar(theta) - 1),
                rep("", length(theta)))

    size.names <- rep("size", length(theta))
    dig1 <- lastchars1 %in% as.character(0:9)
    dig2 <- lastchars2 %in% as.character(0:9)
    size.names <- ifelse(dig1,
                         paste0("size",
                                lastchars1),
                         size.names)
    size.names <- ifelse(dig2,
                         paste0("size",
                                lastchars2,
                                lastchars1),
                     size.names)

    string <- if (short)
      paste0("nbcanlink(", theta,
        ", ", theta,
        "(", size.names, ")",  # Added 20180803
        ")") else {
      theta <- as.char.expression(theta)
      paste0("log(", theta, " / (", theta, " + ",
             size.names, "))")
    }
    if (tag)
      string <- paste("Nbcanlink:", string)
    return(string)
  }



  kmatrix <- size
  theta <- cbind(theta)
  kmatrix <- cbind(kmatrix)
  if (ncol(kmatrix) != ncol(theta))
    stop("arguments 'theta' & 'size' do not have",
         " an equal number of cols")
  if (nrow(kmatrix) != nrow(theta))
    stop("arguments 'theta' & 'size' do not have",
         " an equal number of rows")


  if (deriv > 0) {
    if (!(wrt.param %in% 1:2))
      stop("argument 'wrt.param' should be 1 or 2")
  }


  if (!inverse && length(bvalue))
    theta[theta <= 0.0] <- bvalue

  if (inverse) {
    switch(as.character(deriv),
           "0" = {
       ans <- (kmatrix / expm1(-theta))
       if (is.matrix(ans))
         dimnames(ans) <- NULL else
         names(ans) <- NULL
       ans
       },

        "1" = if (wrt.param == 1)
     (theta * (theta + kmatrix)) / kmatrix else
          -(theta + kmatrix),

       "2" = if (wrt.param == 1)
       (2 * theta + kmatrix) * theta *
           (theta + kmatrix) / kmatrix^2 else
        theta + kmatrix,
           "3" = { #3rd deriv
      stop("3rd deriv not yet implemented")
      })
  } else {
    ans <-
    switch(as.character(deriv),
           "0" = log(theta / (theta + kmatrix)),

           "1" = if (wrt.param == 1)
                     kmatrix / (theta * (theta +
                     kmatrix)) else
                     -1 / (theta + kmatrix),

       "2" = if (wrt.param == 1)
             (2 * theta + kmatrix) *
             (-kmatrix) / (theta *
             (theta + kmatrix))^2 else
             1 / (theta + kmatrix)^2,
       "3" = { #3rd deriv
      stop("3rd deriv not yet implemented")
      })

     if (is.matrix(ans))
       dimnames(ans) <- NULL else
       names(ans) <- NULL
     ans
  }
}  # nbcanlink








 linkfunvlm <-
    function(object, earg = FALSE, ...) {
  if (!any(slotNames(object) == "extra"))
    stop("no 'extra' slot on the object")
  if (!any(slotNames(object) == "misc"))
    stop("no 'misc' slot on the object")

  M <- npred(object)

  misc <- object@misc
  LINKS1 <- misc$link
  EARGS1 <- misc$earg

  extra <- object@extra
  LINKS2 <- extra$link
  EARGS2 <- extra$earg

  if (length(LINKS1) != M &&
      length(LINKS2) != M) {
    if (LINKS1 != "multilogitlink" &&
        LINKS2 != "multilogitlink")
      warning("the length of the 'links' ",
              "component is not ", M)
  }

  if (length(LINKS1)) {
      if (earg) list(link = LINKS1,
                     earg = EARGS1) else LINKS1
  } else {
      if (earg) list(link = LINKS2,
                     earg = EARGS2) else LINKS2
  }
}  # linkfunvlm



if (!isGeneric("linkfun"))
  setGeneric("linkfun", function(object, ...)
      standardGeneric("linkfun"),
      package = "VGAM")



setMethod("linkfun", "vlm", function(object, ...)
    linkfunvlm(object, ...))







 logitoffsetlink <-
  function(theta,
           offset = 0,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE) {
  if (is.character(theta)) {
    string <- if (short)
        paste0("logitoffsetlink(",
               theta,
              ", ", offset[1],
              ")") else
        paste0("log(",
              as.char.expression(theta),
              "/(1-",
              as.char.expression(theta),
              ")",
              " - ", offset[1], ")")
    if (tag)
      string <- paste("Logit-with-offset:", string)
    return(string)
  }




  if (inverse) {
    switch(as.character(deriv),
           "0" = {
      exp.eta <- exp(theta)
      (exp.eta + offset) / (1 + exp.eta + offset)
           },
           "1" = 1 / Recall(theta = theta,
                      offset = offset,
                      inverse = FALSE,
                      deriv = deriv),
   "2" = theta * (1 - theta) * (1 - 2 * theta),
   "3" = { #3rd deriv
      stop("3rd deriv not yet implemented")
      },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
           "0" = {
       temp2 <- log(theta / (1 - theta) - offset)
       temp2
       },
       "1" = 1 / ((1 - theta) *
                  (theta - (1-theta) * offset)),
       "2" = (2 * (theta - offset *
                   (1-theta)) - 1) / (
       (theta - (1-theta)*offset) * (1-theta))^2,
           "3" = { #3rd deriv
      stop("3rd deriv not yet implemented")
      },
       stop("argument 'deriv' unmatched"))
  }
}  # logitoffsetlink






 asinlink <-
  function(theta,
           bvalue = NULL,  # orig.
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE,
           c10 = c(4, -pi)) {  # === alogitlink()
  T <- TRUE; F <- FALSE
  if (!is.Numeric(c10, length.arg = 2))
    stop("bad input for 'c10'")
  if ((c1 <- c10[1]) <= 0)
    stop("c10[1] must be positive")
  c0 <- c10[2]
  plain <- c1 == 1 && c0 == 0
  fc1 <- format(c1, digits = 4)
  fc0 <- format(c0, digits = 4)
  if (is.character(theta)) {
    string <- if (short) {
      if (plain)
        paste0("asinlink(", theta, ")") else
        paste0(fc1, "*asin(sqrt(", theta, "))",
           ifelse(c0 < 0, fc0,
           ifelse(c0 > 0, paste0("+", fc0), "")))
      } else {
        Theta <- as.char.expression(theta)
        if (plain)
        paste0("sqrt(", Theta, ")") else
        paste0(fc1, "*asin(sqrt(", Theta, "))",
           ifelse(c0 < 0, fc0,
           ifelse(c0 > 0, paste0("+", fc0), "")))
    }
    if (tag)
      string <- paste("Arcsinelink:", string)
    return(string)
  }

  if (TRUE && length(bvalue)) {
    if (inverse && deriv == 0) {
      eps <- 1e-7  # 0
      theta[theta <= c0] <- c0 + eps
      theta[theta >= c0+c1*pi/2] <- c0+c1*pi/2 - eps
    } else {
      eps <- 1e-7  # 0
      theta[theta <= 0] <- 0 + eps
      theta[theta >= 1] <- 1 - eps
    }
  }



  
  if (inverse) {
    switch(as.character(deriv),
      "0" = ifelse(c0 <= theta &
                   theta <= c0+c1*pi/2,
            (sin((theta - c0) / c1))^2,
            NaN),
      "1" = 1 / Recall(theta = theta,
                   bvalue = bvalue,
                   inverse = FALSE,
                   deriv = deriv,
                   c10 = c10),
    "2" = {
  iD1 <- Recall(theta, de = 1, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, inv = F, c10 = c10)
  -(iD1^3) * DD2
          },
    "3" = {
  iD1 <- Recall(theta, de = 1, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, inv = F, c10 = c10)
  (iD1^4) * (3 * iD1 * DD2^2 - DD3)
        },
      "4" = {
  iD1 <- Recall(theta, de = 1, inv = T, c10 = c10)
  iD2 <- Recall(theta, de = 2, inv = T, c10 = c10)
  iD3 <- Recall(theta, de = 3, inv = T, c10 = c10)
  DD1 <- Recall(theta, de = 1, inv = F, c10 = c10)
  DD2 <- Recall(theta, de = 2, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, inv = F, c10 = c10)
  DD4 <- Recall(theta, de = 4, inv = F, c10 = c10)
  (iD1^3) * (15 * iD1 * iD2 * (DD2^2) +
              6 * (iD1^3) * DD2 * DD3 -
              4 * iD2 * DD3 - (iD1^2) * DD4)
      },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
     "0" = c1 * asin(sqrt(theta)) + c0,
     "1" = c1 * 0.5 / sqrt(theta * (1 - theta)),
     "2" = (c1 / 4) * (2 * theta - 1) / (theta *
           (1 - theta))^(3/2),
     "3" = (c1 / 4) * 1.5 * ((2 * theta - 1)^2) / (
           theta * (1 - theta))^(5/2) +
           (c1 / 4) * 2 / (theta * (1 - theta))^(3/2),
     "4" = c1 * (15 / 16) * ((2 * theta - 1)^3) / (
           theta * (1 - theta))^(7/2) +
           (c1 / 4) * 9 * (2 * theta - 1) / (theta *
           (1 - theta))^(5/2),
     stop("argument 'deriv' unmatched"))
  }
}  # asinlink







 lcalogitlink <-
  function(theta,
           bvalue = NULL,   # .Machine$double.eps,
           pmix.logit = 0.01,
           tol = 1e-13, nmax = 99,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE,
           c10 = c(4, -pi)) {  # === asinlink()
  T <- TRUE; F <- FALSE
  if (!is.Numeric(c10, length.arg = 2))
    stop("bad input for 'c10'")
  if ((c1 <- c10[1]) <= 0)
    stop("c10[1] must be positive")
  c0 <- c10[2]
  plain <- c1 == 1 && c0 == 0
  fc1 <- format(c1, digits = 4)
  fc0 <- format(c0, digits = 4)
  if (!is.Numeric(pmix.logit, length.arg = 1) ||
     pmix.logit < 0 || pmix.logit > 1)
   stop("bad input for argument 'pmix.logit'")
 
  if (is.character(theta)) {
    string <- if (short)
      paste0("lcalogitlink(", theta, ")") else {
      Theta <- as.char.expression(theta)
      paste0(1 - pmix.logit, "*asinlink(",
             Theta, ")+",
             pmix.logit, "*logitlink(",
             Theta, ")")
    }
    if (tag)
      string <- paste("LC-asin-logit:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }

lcalogitmix <-  # pmix.logit local/global
  function(p, deriv = 0, Value = 0, c10 = c(4, -pi))
(1 - pmix.logit) *
asinlink(p, deriv = deriv, c10 = c10) +
pmix.logit *
logitlink(p, deriv = deriv) - Value
 
  if (inverse) {
    P <- pmix.logit
    switch(as.character(deriv),
    "0" = {  eps <- 0  #  1e-13
       Lo <- numeric(length(theta)) + eps
       Up <- numeric(length(theta)) + 1 - eps
       bisection.basic(lcalogitmix,
                       tol = tol, nmax = nmax,
                       Lo, Up, Value = theta,
                       c10 = c10)
    },
    "1" =  1 / Recall(theta, pm = P, deriv = 1, c10 = c10),
    "2" = {
  iD1 <- Recall(theta, de = 1, pm=P, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, pm=P, inv = F, c10 = c10)
  -(iD1^3) * DD2
          },
    "3" = {
  iD1 <- Recall(theta, de = 1, pm=P, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, pm=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, pm=P, inv = F, c10 = c10)
  (iD1^4) * (3 * iD1 * DD2^2 - DD3)
        },
        "4" = {
  iD1 <- Recall(theta, de = 1, pm=P, inv = T, c10 = c10)
  iD2 <- Recall(theta, de = 2, pm=P, inv = T, c10 = c10)
  iD3 <- Recall(theta, de = 3, pm=P, inv = T, c10 = c10)
  DD1 <- Recall(theta, de = 1, pm=P, inv = F, c10 = c10)
  DD2 <- Recall(theta, de = 2, pm=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, pm=P, inv = F, c10 = c10)
  DD4 <- Recall(theta, de = 4, pm=P, inv = F, c10 = c10)
  (iD1^3) * (15 * iD1 * iD2 * (DD2^2) +
              6 * (iD1^3) * DD2 * DD3 -
              4 * iD2 * DD3 - (iD1^2) * DD4)
        },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
    "0" = lcalogitmix(theta, deriv = 0, c10 = c10),
    "1" = lcalogitmix(theta, deriv = 1, c10 = c10),
    "2" = lcalogitmix(theta, deriv = 2, c10 = c10),
    "3" = lcalogitmix(theta, deriv = 3, c10 = c10),
    "4" = lcalogitmix(theta, deriv = 4, c10 = c10),
      stop("argument 'deriv' unmatched"))
  }
}  # lcalogitlink





 sqrtlink <-
  function(theta,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE,
           c10 = c(2, -2)) {  # poissonff-sloglink
  T <- TRUE; F <- FALSE
  if (!is.Numeric(c10, length.arg = 2))
    stop("bad input for 'c10'")
  if ((c1 <- c10[1]) <= 0)
    stop("c10[1] must be positive")
  c0 <- c10[2]
  plain <- c1 == 1 && c0 == 0
  fc1 <- format(c1, digits = 4)
  fc0 <- format(c0, digits = 4)
  if (is.character(theta)) {
    string <- if (short) {
      if (plain)
        paste0("sqrtlink(", theta, ")") else
        paste0(fc1, "*sqrtlink(", theta, ")",
           ifelse(c0 < 0, fc0,
           ifelse(c0 > 0, paste0("+", fc0), "")))
      } else {
        theta <- as.char.expression(theta)
        if (plain)
        paste0("sqrt(", theta, ")") else
        paste0(fc1, "*sqrt(", theta, ")",
           ifelse(c0 < 0, fc0,
           ifelse(c0 > 0, paste0("+", fc0), "")))
    }
    if (tag)
      string <- paste("Square root:", string)
    return(string)
  }

  if (inverse) {
    switch(as.character(deriv),
      "0" = ((theta - c0) / c1)^2,
      "1" = 2 * sqrt(theta) / c1,
      "2" = 2 / c1^2,
      "3" = 0, "4" = 0, "5" = 0, "6" = 0,
      stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
       "0" =  c1 * sqrt(theta) + c0,
       "1" =  c1 * 0.5 / sqrt(theta),
       "2" = -c1 * 0.25 / theta^1.5,
       "3" =  c1 * (3 / 8) / theta^2.5,
       "4" = -c1 * (15 / 16) / theta^3.5,
       "5" = stop("5th deriv not implemented"),
    stop("argument 'deriv' unmatched"))
  }
}  # sqrtlink






 lcsloglink <-
  function(theta,
           bvalue = NULL,   # .Machine$double.eps,
           pmix.log = 0.01,
           tol = 1e-13, nmax = 99,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE,
           c10 = c(2, -2)) {  # poissonff-sloglink
  T <- TRUE; F <- FALSE
  if (!is.Numeric(c10, length.arg = 2))
    stop("bad input for 'c10'")
  if ((c1 <- c10[1]) <= 0)
    stop("c10[1] must be positive")
  c0 <- c10[2]
  plain <- c1 == 1 && c0 == 0
  fc1 <- format(c1, digits = 4)
  fc0 <- format(c0, digits = 4)
  if (!is.Numeric(pmix.log, length.arg = 1) ||
      pmix.log < 0 || pmix.log > 1)
    stop("bad input for argument 'pmix.log'")
 
  if (is.character(theta)) {
    string <- if (short)
      paste0("lcsloglink(", theta, ")") else {
      Theta <- as.char.expression(theta)
      paste0(1- pmix.log, "*sqrtlink(",
             Theta, ")+",
             pmix.log, "*loglink(",
             Theta, ")")
    }
    if (tag)
      string <- paste("LC-sqrt-log:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }

lcslogmix <-  # pmix.log local/global
  function(mu, deriv = 0, Value = 0, c10 = c(2, -2))
(1 - pmix.log) *
sqrtlink(mu, deriv = deriv, c10 = c10) +
pmix.log *
loglink(mu, deriv = deriv) - Value

  if (inverse) {
    P <- pmix.log
    switch(as.character(deriv),
    "0" = {  smallno <- 1e-10  # 1e-12
       Lo <- pmin(((theta - c0) / c1)^2,
                  exp(theta)) - 2.5
       Up <- pmax(((theta - c0) / c1)^2,
                  exp(theta)) + 2.5
       Up <- pmax(Up, max(theta, na.rm = TRUE))
       bisection.basic(lcslogmix,
           tol = tol, nmax = nmax,
           Lo, Up, Value = theta, c10 = c10)
    },
    "1" =  1 / Recall(theta, pm = P, deriv = 1, c10 = c10),
    "2" = {
  iD1 <- Recall(theta, der = 1, inv = T, c10 = c10)
  DD2 <- Recall(theta, der = 2, inv = F, c10 = c10)
  -(iD1^3) * DD2
          },
    "3" = {
  iD1 <- Recall(theta, de = 1, pm=P, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, pm=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, pm=P, inv = F, c10 = c10)
  (iD1^4) * (3 * iD1 * DD2^2 - DD3)
        },
        "4" = {
  iD1 <- Recall(theta, de = 1, pm=P, inv = T, c10 = c10)
  iD2 <- Recall(theta, de = 2, pm=P, inv = T, c10 = c10)
  iD3 <- Recall(theta, de = 3, pm=P, inv = T, c10 = c10)
  DD1 <- Recall(theta, de = 1, pm=P, inv = F, c10 = c10)
  DD2 <- Recall(theta, de = 2, pm=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, pm=P, inv = F, c10 = c10)
  DD4 <- Recall(theta, de = 4, pm=P, inv = F, c10 = c10)
  (iD1^3) * (15 * iD1 * iD2 * (DD2^2) +
              6 * (iD1^3) * DD2 * DD3 -
              4 * iD2 * DD3 - (iD1^2) * DD4)
        },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
    "0" = lcslogmix(theta, deriv = 0, c10 = c10),
    "1" = lcslogmix(theta, deriv = 1, c10 = c10),
    "2" = lcslogmix(theta, deriv = 2, c10 = c10),
    "3" = lcslogmix(theta, deriv = 3, c10 = c10),
    "4" = lcslogmix(theta, deriv = 4, c10 = c10),
      stop("argument 'deriv' unmatched"))
  }
}  # lcsloglink







   sloglink <-
  function(theta,
           bvalue = NULL,   # .Machine$double.eps,
           taumix.log = 1,  # [0, Inf)
           tol = 1e-13, nmax = 99,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE,
           c10 = c(2, -2)) {  # poissonff-sloglink
  T <- TRUE; F <- FALSE
  if (!is.Numeric(c10, length.arg = 2))
    stop("bad input for 'c10'")
  if ((c1 <- c10[1]) <= 0)
    stop("c10[1] must be positive")
  c0 <- c10[2]
  plain <- c1 == 1 && c0 == 0
  fc1 <- format(c1, digits = 4)
  fc0 <- format(c0, digits = 4)
  if (!is.Numeric(taumix.log, length.arg = 1) ||
      taumix.log < 0)
    stop("bad input for argument 'taumix.log'")
 
  if (is.character(theta)) {
    string <- if (short)
      paste0("sloglink(", theta, ")") else {
      Theta <- as.char.expression(theta)
      paste0("-expm1(-p*", taumix.log,
             ")*sqrtlink(",
             Theta, ")+exp(-p*",
             taumix.log, ")*loglink(",
             Theta, ")")
    }
    if (tag)
      string <- paste("EW-sqrt-log:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }

ewslogmix <-
  function(mu, deriv = 0, Value = 0,
           c10 = c(2, -2)) {
  eta <- (-taumix.log * mu)
  if (deriv == 0) return(
    -expm1(eta) *
    sqrtlink(mu, deriv = deriv, c10 = c10) +
    exp(eta) *
    loglink(mu, deriv = deriv) - Value)
  if (deriv == 1) {
    dd1 <- (-taumix.log)
    return(
    sqrtlink(mu, deriv = deriv, c10 = c10) -
    exp(eta) * (
    sqrtlink(mu, deriv = deriv, c10 = c10) -
     loglink(mu, deriv = deriv) + dd1 * (
    sqrtlink(mu, c10 = c10) - loglink(mu))))
    }
  if (deriv == 2) {
    dd1 <- (-taumix.log)
    dd2 <- 0
    return(
    sqrtlink(mu, deriv = deriv, c10 = c10) -
    exp(eta) * (
    sqrtlink(mu, deriv = deriv, c10 = c10) -
     loglink(mu, deriv = deriv) +
    (dd2 + dd1^2) * ( 
    sqrtlink(mu, c10 = c10) - loglink(mu)) +
    2 * dd1 * ( 
    sqrtlink(mu, deriv = 1, c10 = c10) -
    loglink(mu, deriv = 1))))
  }
  if (deriv == 3) {
    dd1 <- (-taumix.log)
    dd2 <- dd3 <- 0
    return(
    sqrtlink(mu, deriv = deriv, c10 = c10) -
    exp(eta) * (
    sqrtlink(mu, deriv = deriv, c10 = c10) -
     loglink(mu, deriv = deriv) +
    (dd3 + dd1 * (3 * dd2 + dd1^2)) * ( 
        sqrtlink(mu, c10 = c10) -
        loglink(mu)) + 3 * dd1 * ( 
    sqrtlink(mu, deriv = 2, c10 = c10) -
     loglink(mu, deriv = 2)) +
    3 * (dd2 + dd1^2) * ( 
    sqrtlink(mu, deriv = 1, c10 = c10) -
     loglink(mu, deriv = 1))))
  }
  if (deriv == 4) {
    stop("yettodo")
  }
  }  # ewslogmix

     
  if (inverse) {
    P <- taumix.log      
    switch(as.character(deriv),
    "0" = { eps <- 0   # 1e-14
       Lo <- pmin(((theta - c0) / c1)^2,
                  exp(theta)) - 2.5
       Lo <- pmax(Lo, eps)  # 20240110
       Up <- pmax(((theta - c0) / c1)^2,
                  exp(theta)) + 2.5
       Up <- pmax(Up, max(theta, na.rm = TRUE))
       bisection.basic(ewslogmix, c10 = c10,
                       tol = tol, nmax = nmax,
                       Lo, Up, Value = theta)
    },
    "1" =  1 / Recall(theta, tau=P, der = 1, c10 = c10),
    "2" = {
  iD1 <- Recall(theta, de = 1, tau=P, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, tau=P, inv = F, c10 = c10)
  -(iD1^3) * DD2
          },
    "3" = {
  iD1 <- Recall(theta, de = 1, tau=P, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, tau=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, tau=P, inv = F, c10 = c10)
  (iD1^4) * (3 * iD1 * DD2^2 - DD3)
        },
        "4" = {
  iD1 <- Recall(theta, de = 1, tau=P, inv = T, c10 = c10)
  iD2 <- Recall(theta, de = 2, tau=P, inv = T, c10 = c10)
  iD3 <- Recall(theta, de = 3, tau=P, inv = T, c10 = c10)
  DD1 <- Recall(theta, de = 1, tau=P, inv = F, c10 = c10)
  DD2 <- Recall(theta, de = 2, tau=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, tau=P, inv = F, c10 = c10)
  DD4 <- Recall(theta, de = 4, tau=P, inv = F, c10 = c10)
  (iD1^3) * (15 * iD1 * iD2 * (DD2^2) +
              6 * (iD1^3) * DD2 * DD3 -
              4 * iD2 * DD3 - (iD1^2) * DD4)
        },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
    "0" = ewslogmix(theta, deriv = 0, c10 = c10),
    "1" = ewslogmix(theta, deriv = 1, c10 = c10),
    "2" = ewslogmix(theta, deriv = 2, c10 = c10),
    "3" = ewslogmix(theta, deriv = 3, c10 = c10),
    "4" = ewslogmix(theta, deriv = 4, c10 = c10),
      stop("argument 'deriv' unmatched"))
  }
}  # sloglink





   alogitlink <-
  function(theta,
           bvalue = NULL,   # .Machine$double.eps,
           taumix.logit = 1,  # [0, Inf)
           tol = 1e-13, nmax = 99,
           inverse = FALSE, deriv = 0,
           short = TRUE, tag = FALSE,
           c10 = c(4, -pi)) {  # === asinlink()
  T <- TRUE; F <- FALSE
  if (!is.Numeric(c10, length.arg = 2))
    stop("bad input for 'c10'")
  if ((c1 <- c10[1]) <= 0)
    stop("c10[1] must be positive")
  c0 <- c10[2]
  plain <- c1 == 1 && c0 == 0
  fc1 <- format(c1, digits = 4)
  fc0 <- format(c0, digits = 4)
  ftm <- format(taumix.logit, digits = 4)
  if (!is.Numeric(taumix.logit, length.arg = 1) ||
      taumix.logit < 0)
    stop("bad input for argument 'taumix.logit'")
 
  if (is.character(theta)) {
    string <- if (short)
      paste0("alogitlink(", theta, ")") else {
      Theta <- as.char.expression(theta)
      paste0("-expm1(-p*(1-p)*", ftm,
             ")*asinlink(",
             Theta, ")+exp(-p*(1-p)*",
             ftm, ")*logitlink(",
             Theta, ")")
    }
    if (tag)
      string <- paste("EW-asin-logit:", string)
    return(string)
  }

  if (!inverse && length(bvalue)) {
    theta[theta <= 0.0] <- bvalue
    theta[theta >= 1.0] <- 1.0 - bvalue
  }

ewalogitmix <-
  function(mu, deriv = 0, Val = 0,
           c10 = c(4, -pi)) {
  eta <- (-taumix.logit * mu * (1 - mu))
  if (deriv == 0) return(
    -expm1(eta) *
    asinlink(mu, deriv = deriv, c10 = c10) +
    exp(eta) *
    logitlink(mu, deriv = deriv) - Val)
  if (deriv == 1) {
    dd1 <- (-taumix.logit) * (1 - 2 * mu)
    return(
     asinlink(mu, deriv = deriv, c10 = c10) -
     exp(eta) * (
     asinlink(mu, deriv = deriv, c10 = c10) -
     logitlink(mu, deriv = deriv) +
     dd1 * (
         asinlink(mu, c10 = c10) -
         logitlink(mu))))
    }
  if (deriv == 2) {
    dd1 <- (-taumix.logit) * (1 - 2 * mu)
    dd2 <-   taumix.logit * 2
    return(
     asinlink(mu, deriv = deriv, c10 = c10) -
     exp(eta) * (
     asinlink(mu, deriv = deriv, c10 = c10) -
    logitlink(mu, deriv = deriv) +
    (dd2 + dd1^2) * ( 
     asinlink(mu, c10 = c10) -
    logitlink(mu)) + 2 * dd1 * ( 
     asinlink(mu, deriv = 1, c10 = c10) -
    logitlink(mu, deriv = 1))))
  }
  if (deriv == 3) {
    dd1 <- (-taumix.logit) * (1 - 2 * mu)
    dd2 <-   taumix.logit * 2
    dd3 <- 0
    return(
     asinlink(mu, deriv = deriv, c10 = c10) -
     exp(eta) * (
     asinlink(mu, deriv = deriv, c10 = c10) -
    logitlink(mu, deriv = deriv) +
    (dd3 + dd1 * (3 * dd2 + dd1^2)) * ( 
     asinlink(mu, c10 = c10) -
     logitlink(mu)) + 3 * dd1 * ( 
     asinlink(mu, deriv = 2, c10 = c10) -
    logitlink(mu, deriv = 2)) +
    3 * (dd2 + dd1^2) * ( 
     asinlink(mu, deriv = 1, c10 = c10) -
    logitlink(mu, deriv = 1))))
  }
  if (deriv == 4) {
    stop("yettodo")
  }
  }  # ewalogitmix
      
  if (inverse) {
    P <- taumix.logit
    switch(as.character(deriv),
    "0" = {  eps <- 0  # 1e-13
       Lo <- numeric(length(theta)) + eps
       Up <- numeric(length(theta)) + 1 - eps
       bisection.basic(ewalogitmix,
                       tol = tol, nmax = nmax,
                       Lo, Up, Val = theta,
                       c10 = c10)
    },
    "1" =  1 / Recall(theta, tau=P, der = 1, c10 = c10),
    "2" = {
  iD1 <- Recall(theta, de = 1, tau=P, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, tau=P, inv = F, c10 = c10)
  -(iD1^3) * DD2
          },
    "3" = {
  iD1 <- Recall(theta, de = 1, tau=P, inv = T, c10 = c10)
  DD2 <- Recall(theta, de = 2, tau=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, tau=P, inv = F, c10 = c10)
  (iD1^4) * (3 * iD1 * DD2^2 - DD3)
        },
        "4" = {
  iD1 <- Recall(theta, de = 1, tau=P, inv = T, c10 = c10)
  iD2 <- Recall(theta, de = 2, tau=P, inv = T, c10 = c10)
  iD3 <- Recall(theta, de = 3, tau=P, inv = T, c10 = c10)
  DD1 <- Recall(theta, de = 1, tau=P, inv = F, c10 = c10)
  DD2 <- Recall(theta, de = 2, tau=P, inv = F, c10 = c10)
  DD3 <- Recall(theta, de = 3, tau=P, inv = F, c10 = c10)
  DD4 <- Recall(theta, de = 4, tau=P, inv = F, c10 = c10)
  (iD1^3) * (15 * iD1 * iD2 * (DD2^2) +
              6 * (iD1^3) * DD2 * DD3 -
              4 * iD2 * DD3 - (iD1^2) * DD4)
        },
           stop("argument 'deriv' unmatched"))
  } else {
    switch(as.character(deriv),
    "0" = ewalogitmix(theta, deriv = 0, c10 = c10),
    "1" = ewalogitmix(theta, deriv = 1, c10 = c10),
    "2" = ewalogitmix(theta, deriv = 2, c10 = c10),
    "3" = ewalogitmix(theta, deriv = 3, c10 = c10),
    "4" = ewalogitmix(theta, deriv = 4, c10 = c10),
      stop("argument 'deriv' unmatched"))
  }
}  # alogitlink

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VGAM documentation built on May 29, 2024, 6:56 a.m.