API for scITD
Single-Cell Interpretable Tensor Decomposition
| Global functions | |
|---|---|
| apply_combat | Man page Source code |
| calculate_fiber_fstats | Man page Source code |
| check_rec_pres | Man page Source code |
| clean_data | Man page Source code |
| colMeanVars | Man page Source code |
| compare_decompositions | Man page Source code |
| compute_LR_interact | Man page Source code |
| compute_associations | Man page Source code |
| compute_donor_props | Man page Source code |
| convert_gn | Man page Source code |
| count_word | Man page Source code |
| determine_ranks_tucker | Man page Source code |
| form_tensor | Man page Source code |
| get_all_lds_factor_plots | Man page Source code |
| get_callouts_annot | Man page Source code |
| get_ctype_exp_var | Man page Source code |
| get_ctype_prop_associations | Man page Source code |
| get_ctype_subc_prop_associations | Man page Source code |
| get_ctype_vargenes | Man page Source code |
| get_donor_meta | Man page Source code |
| get_factor_exp_var | Man page Source code |
| get_fstats_pvals | Man page Source code |
| get_gene_modules | Man page Source code |
| get_gene_set_vectors | Man page Source code |
| get_indv_subtype_associations | Man page Source code |
| get_intersecting_pathways | Man page Source code |
| get_leading_edge_genes | Man page Source code |
| get_lm_pvals | Man page Source code |
| get_max_correlations | Man page Source code |
| get_meta_associations | Man page Source code |
| get_min_sig_genes | Man page Source code |
| get_module_enr | Man page Source code |
| get_normalized_variance | Man page Source code |
| get_num_batch_ranks | Man page Source code |
| get_one_factor | Man page Source code |
| get_one_factor_gene_pvals | Man page Source code |
| get_pseudobulk | Man page Source code |
| get_real_fstats | Man page Source code |
| get_reconstruct_errors_svd | Man page Source code |
| get_significance_vectors | Man page Source code |
| get_subclust_de_hmaps | Man page Source code |
| get_subclust_enr_dotplot | Man page Source code |
| get_subclust_enr_fig | Man page Source code |
| get_subclust_enr_hmap | Man page Source code |
| get_subclust_umap | Man page Source code |
| get_subclusters | Man page Source code |
| get_subtype_prop_associations | Man page Source code |
| get_sums | Man page Source code |
| ht_clusters | Man page Source code |
| identify_sex_metadata | Man page Source code |
| initialize_params | Man page Source code |
| instantiate_scMinimal | Man page Source code |
| is_GO_id | Man page Source code |
| make_new_container | Man page Source code |
| merge_small_clusts | Man page Source code |
| nmf_unfolded | Man page Source code |
| norm_var_helper | Man page Source code |
| normalize_counts | Man page Source code |
| normalize_pseudobulk | Man page Source code |
| parse_data_by_ctypes | Man page Source code |
| pca_unfolded | Man page Source code |
| plotDEheatmap_conos | Man page Source code |
| plot_donor_matrix | Man page Source code |
| plot_donor_props | Man page Source code |
| plot_donor_sig_genes | Man page Source code |
| plot_dscore_enr | Man page Source code |
| plot_gsea_hmap | Man page Source code |
| plot_gsea_hmap_w_similarity | Man page Source code |
| plot_gsea_sub | Man page Source code |
| plot_loadings_annot | Man page Source code |
| plot_mod_and_lig | Man page Source code |
| plot_multi_module_enr | Man page Source code |
| plot_rec_errors_bar_svd | Man page Source code |
| plot_rec_errors_line_svd | Man page Source code |
| plot_scores_by_meta | Man page Source code |
| plot_select_sets | Man page Source code |
| plot_stability_results | Man page Source code |
| plot_subclust_associations | Man page Source code |
| prep_LR_interact | Man page Source code |
| project_new_data | Man page Source code |
| reduce_dimensions | Man page Source code |
| reduce_to_vargenes | Man page Source code |
| render_multi_plots | Man page Source code |
| reshape_loadings | Man page Source code |
| run_fgsea | Man page Source code |
| run_gsea_one_factor | Man page Source code |
| run_hypergeometric_gsea | Man page Source code |
| run_jackstraw | Man page Source code |
| run_stability_analysis | Man page Source code |
| run_tucker_ica | Man page Source code |
| sample_fibers | Man page Source code |
| scale_fontsize | Man page Source code |
| scale_variance | Man page Source code |
| seurat_to_scMinimal | Man page Source code |
| shuffle_fibers | Man page Source code |
| stack_tensor | Man page Source code |
| stop_wrap | Man page |
| subset_scMinimal | Man page Source code |
| test_container | Man page |
| tucker_ica_helper | Man page Source code |
| update_params | Man page Source code |
| vargenes_anova | Man page Source code |
