Files in scITD

Single-Cell Interpretable Tensor Decomposition

README.md R/RcppExports.R R/get_meta_associations.R R/get_prop_associations.R R/manage_scMinimal.R R/plot_tucker.R R/data.R R/run_gsea.R R/get_LR_interact.R R/run_jackstraw.R R/test_stability.R R/run_tucker_ica.R R/manage_container.R R/form_tensor.R R/determine_ranks_tucker.R R/convert_gn.R tests/testthat.R tests/testthat/test_functions.R man/plot_donor_props.Rd man/get_subclust_enr_hmap.Rd man/scale_variance.Rd man/get_significance_vectors.Rd man/plotDEheatmap_conos.Rd man/reshape_loadings.Rd man/project_new_data.Rd man/reduce_dimensions.Rd man/colMeanVars.Rd man/subset_scMinimal.Rd man/stack_tensor.Rd man/normalize_counts.Rd man/get_ctype_exp_var.Rd man/get_subclust_enr_dotplot.Rd man/ht_clusters.Rd man/calculate_fiber_fstats.Rd man/plot_gsea_hmap_w_similarity.Rd man/plot_donor_sig_genes.Rd man/get_intersecting_pathways.Rd man/merge_small_clusts.Rd man/get_factor_exp_var.Rd man/update_params.Rd man/form_tensor.Rd man/get_callouts_annot.Rd man/seurat_to_scMinimal.Rd man/plot_gsea_sub.Rd man/compare_decompositions.Rd man/get_subclust_enr_fig.Rd man/run_hypergeometric_gsea.Rd man/compute_donor_props.Rd man/run_jackstraw.Rd man/count_word.Rd man/render_multi_plots.Rd man/get_meta_associations.Rd man/plot_rec_errors_line_svd.Rd man/pca_unfolded.Rd man/get_real_fstats.Rd man/reduce_to_vargenes.Rd man/get_indv_subtype_associations.Rd man/initialize_params.Rd man/parse_data_by_ctypes.Rd man/test_container.Rd man/vargenes_anova.Rd man/plot_stability_results.Rd man/plot_mod_and_lig.Rd man/compute_LR_interact.Rd man/apply_combat.Rd man/get_subclust_de_hmaps.Rd man/get_subclusters.Rd man/get_gene_modules.Rd man/plot_loadings_annot.Rd man/plot_dscore_enr.Rd man/get_subtype_prop_associations.Rd man/get_one_factor.Rd man/compute_associations.Rd man/plot_scores_by_meta.Rd man/identify_sex_metadata.Rd man/plot_donor_matrix.Rd man/get_leading_edge_genes.Rd man/get_normalized_variance.Rd man/normalize_pseudobulk.Rd man/is_GO_id.Rd man/plot_gsea_hmap.Rd man/stop_wrap.Rd man/get_ctype_vargenes.Rd man/sample_fibers.Rd man/run_stability_analysis.Rd man/plot_rec_errors_bar_svd.Rd man/get_max_correlations.Rd man/get_donor_meta.Rd man/get_pseudobulk.Rd man/nmf_unfolded.Rd man/check_rec_pres.Rd man/get_fstats_pvals.Rd man/instantiate_scMinimal.Rd man/get_reconstruct_errors_svd.Rd man/make_new_container.Rd man/get_lm_pvals.Rd man/prep_LR_interact.Rd man/tucker_ica_helper.Rd man/plot_select_sets.Rd man/run_gsea_one_factor.Rd man/get_ctype_subc_prop_associations.Rd man/run_fgsea.Rd man/get_min_sig_genes.Rd man/get_num_batch_ranks.Rd man/run_tucker_ica.Rd man/plot_subclust_associations.Rd man/shuffle_fibers.Rd man/norm_var_helper.Rd man/get_sums.Rd man/scale_fontsize.Rd man/get_one_factor_gene_pvals.Rd man/get_all_lds_factor_plots.Rd man/plot_multi_module_enr.Rd man/get_ctype_prop_associations.Rd man/get_module_enr.Rd man/get_gene_set_vectors.Rd man/clean_data.Rd man/get_subclust_umap.Rd man/convert_gn.Rd man/determine_ranks_tucker.Rd