Files in Syksy/curatedPCaData
Curated Prostate Cancer Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/curatedPCaData-package.R
R/data.R
R/getpca.R
R/getpcasummaries.R
R/sysdata.rda
README.Rmd
README.html
README.md
data-raw/R/create.R
data-raw/R/exportfuncs.R
data-raw/R/generate.R
data-raw/R/genomic_risk.R
data-raw/R/utils.R
data-raw/data-curatedPCaData_genes.R
data-raw/derive-variables.R
data-raw/download-clinical.R
data-raw/download-data.R
data-raw/legacy_roxygen/data.R
data-raw/legacy_scripts/benchmarking.R
data-raw/legacy_scripts/benchmarking_tcga_cbioportal.R
data-raw/legacy_scripts/correlation_between_gex.R
data-raw/legacy_scripts/data.R
data-raw/legacy_scripts/genomic_risk_acs.R
data-raw/legacy_scripts/oncoprints.R
data-raw/legacy_scripts/process_gex_cibersort.R
data-raw/legacy_workspaces/alt_matrices_ME.RData
data-raw/legacy_workspaces/alt_matrices_oncoprint.RData
data-raw/legacy_workspaces/correlation_AR_and_ERG.RData
data-raw/legacy_workspaces/correlation_AR_and_ERG_met.RData
data-raw/legacy_workspaces/correlation_between_gex.RData
data/template_prad.rda
inst/CITATION
inst/extdata/metadata.csv
inst/scripts/make-data.R
inst/scripts/make-metadata.R
man/curatedPCaData.Rd
man/curatedPCaDatasets_abida.Rd
man/curatedPCaDatasets_baca.Rd
man/curatedPCaDatasets_barbieri.Rd
man/curatedPCaDatasets_barwick.Rd
man/curatedPCaDatasets_chandran.Rd
man/curatedPCaDatasets_friedrich.Rd
man/curatedPCaDatasets_hieronymus.Rd
man/curatedPCaDatasets_icgcca.Rd
man/curatedPCaDatasets_igc.Rd
man/curatedPCaDatasets_kim.Rd
man/curatedPCaDatasets_kunderfranco.Rd
man/curatedPCaDatasets_ren.Rd
man/curatedPCaDatasets_sun.Rd
man/curatedPCaDatasets_taylor.Rd
man/curatedPCaDatasets_tcga.Rd
man/curatedPCaDatasets_true.Rd
man/curatedPCaDatasets_wallace.Rd
man/curatedPCaDatasets_wang.Rd
man/curatedPCaDatasets_weiner.Rd
man/figures/hex.png
man/figures/hex_sticker.R
man/figures/tumor.png
man/getPCa.Rd
man/getPCaStudies.Rd
man/getPCaSummarySamples.Rd
man/getPCaSummaryStudies.Rd
man/getPCaSummarySurv.Rd
man/getPCaSummaryTable.Rd
man/template_prad.Rd
tests/native_tests.R
vignettes/.gitignore
vignettes/overview.Rmd
vignettes/references.bib
