API for ss-lab-cancerunit/SpiderSeqR
A Tool for Integration of Big Bio Data
| Global functions | |
|---|---|
| %>% | Man page |
| .ConnectGEO | Source code |
| .DBFileExists | Source code |
| .DBNames | Source code Source code |
| .appendGSEColumns | Man page Source code |
| .batchedAccSearch | Man page Source code |
| .chExtractor | Man page Source code |
| .checkCondition | Man page Source code |
| .checkDBFile | Man page Source code Source code |
| .checkDBNames | Source code Source code |
| .checkFileDate | Man page Source code |
| .checkValidColumns | Man page Source code |
| .clearUpDBFiles | Man page Source code |
| .convertPairedEnds | Man page Source code |
| .countAccessionMatches | Man page Source code |
| .createCustomDBFile | Man page Source code |
| .createDemoGEO | Man page Source code |
| .createDemoSRA | Man page Source code |
| .createDemoSRR_GSM | Man page Source code |
| .createFtsTable | Man page Source code |
| .createMockCustomDB | Man page Source code Source code |
| .createMockGEO | Man page Source code Source code |
| .createMockSRA | Man page Source code Source code |
| .createSRR_GSM | Source code |
| .createSpiderMetaInfo | Man page Source code |
| .cwt | Man page Source code |
| .detectControls | Man page Source code |
| .detectInputs | Man page Source code |
| .detectMerges | Man page Source code |
| .extractGSM | Man page Source code |
| .filterSRAByTermByAccessionLevel | Man page Source code |
| .findAccessionLevelColumnNames | Man page Source code |
| .findDBFiles | Man page Source code Source code |
| .findDBFiles_Ori | Man page Source code |
| .findFiles | Man page Source code Source code |
| .findFiles_Ori | Man page Source code |
| .findSRAAccessionLevelColumnNames | Man page Source code |
| .generateCallRecord | Man page Source code |
| .generateDBExtract | Man page Source code |
| .generateEmptyDF | Man page Source code |
| .generateFileName | Man page Source code |
| .generateFileName_Accession | Man page Source code |
| .generateFileName_CALL_SA | Man page Source code |
| .generateFileName_CALL_SFA | Man page Source code |
| .generateOutput | Man page Source code |
| .generateOutput_Accession | Man page Source code |
| .generateParameterRecord | Man page Source code |
| .generateSampleSheet_ChIP | Man page Source code |
| .generateSampleSheet_Other | Man page Source code |
| .generateSampleSheet_RNA | Man page Source code |
| .generateUniversalSampleSheet | Man page Source code |
| .getDBFile | Source code |
| .getFurtherDBInfo | Man page Source code |
| .listGSEFields | Man page Source code |
| .listGSMFields | Man page Source code |
| .listSRAFields | Man page Source code |
| .manageColumns | Man page Source code |
| .manageLibraryStrategy | Man page Source code |
| .missingFileCheck | Man page Source code Source code |
| .mm | Man page Source code |
| .noDBFile | Man page Source code |
| .oldDBFile | Source code |
| .orderDFColumns | Man page Source code |
| .parQuery | Man page Source code |
| .progressBar | Man page Source code |
| .rbindUniqueCols | Man page Source code |
| .renameGSEColumns | Man page Source code |
| .renameGSMColumns | Man page Source code |
| .renameOTHColumns | Man page Source code |
| .renameSRAColumns | Man page Source code |
| .replaceForbiddenCharacters | Man page Source code |
| .saExtractor | Man page Source code |
| .searchAnywhereGEO | Man page Source code |
| .searchAnywhereGSE | Man page Source code |
| .searchAnywhereGSM | Man page Source code |
| .searchAnywhereSRA | Man page Source code |
| .searchForAccessionAcrossDBsDF | Man page Source code |
| .searchForSRPChildren | Man page Source code |
| .searchGEOForGSE | Man page Source code |
| .searchGEOForGSM | Man page Source code |
| .searchSRA | Man page Source code |
| .searchSRAForAccession | Man page Source code |
| .searchSRR_GSM | Man page Source code |
| .setDBConnections | Man page Source code |
| .setExpiryParameters | Man page Source code Source code |
| .simpleSearchGEOForGSE | Source code |
| .simpleSearchGEOForGSM | Source code |
| .simpleSearchSRAForAccession | Source code |
| .simpleSearchSRR_GSM | Source code |
| .testCon | Source code |
| .testEmbed | Source code |
| .tmenu | Man page Source code |
| .unifyDFFormat | Man page Source code |
| .unifyNAs | Man page Source code |
| .universalExtractor | Man page Source code |
| .verifyColumns | Man page Source code |
| .verifyConditions | Man page Source code |
| .verifyMissingRuns | Man page Source code |
| .verifySimpleConditions | Man page Source code |
| .verifySuperseries | Man page Source code |
| .vex | Man page Source code |
| .withOut | Man page Source code |
| .writeQuery | Man page Source code |
| .writeTableToFile | Man page Source code Source code |
| .writeTableToFile_Ori | Man page Source code |
| SRA_GEO_Category_Conversion | Man page |
| SpiderSeqR | Man page |
| SpiderSeqR-package | Man page |
| SpiderSeqREnv | Man page |
| addMissingSamples | Man page Source code |
| ass_startSpiderSeqR | Source code |
| classifyAccession | Man page Source code |
| convertAccession | Man page Source code |
| convertCategoriesToLibraryStrategyType | Man page Source code |
| createEmptyColumns | Source code |
| filterByTerm | Man page Source code |
| filterByTermByAccessionLevel | Man page Source code |
| getColumnDescriptions | Man page Source code |
| getDatabaseInformation | Man page Source code |
| getSpiderSeqROption | Man page |
| gse_demo | Man page |
| gsm_demo | Man page |
| listColumnSets | Man page Source code |
| listValidColumns | Man page Source code |
| orderAccessions | Man page Source code |
| orderDFAccessions | Man page Source code |
| rerunSpiderSeqR | Man page Source code |
| searchAnywhere | Man page Source code |
| searchForAccession | Man page Source code |
| searchForTerm | Man page Source code |
| selectColumns | Man page Source code |
| selectColumns_Accession | Man page Source code |
| selectColumns_Overview | Man page Source code |
| setSpiderSeqROption | Man page |
| sra_demo | Man page |
| srr_demo | Man page |
| startSpiderSeqR | Man page Source code |
| startSpiderSeqRDemo | Man page Source code |
| testSpiderSeqRConnections | Man page Source code |
