Files in stefpeschel/NetCoMi

Network Construction and Comparison for Microbiome Data

NEWS.Rmd NEWS.md R/NetCoMi-package.R R/calcGCD.R R/calcGCM.R R/cclasso.R R/colToTransp.R R/createAssoPerm.R R/diffnet.R R/dot-boottest.R R/dot-calcAssociation.R R/dot-calcDiffProps.R R/dot-calcJaccard.R R/dot-calcProps.R R/dot-checkArgsCreateAP.R R/dot-checkArgsDiffnet.R R/dot-checkArgsNetAna.R R/dot-checkArgsNetComp.R R/dot-checkArgsNetConst.R R/dot-checkArgsPlotDiff.R R/dot-checkArgsPlotHeat.R R/dot-checkArgsPlotMNP.R R/dot-checkPackNetConst.R R/dot-checkPlausNetConst.R R/dot-filterFunctions.R R/dot-getClustCols.R R/dot-getNodeSize.R R/dot-getPermGroupMat.R R/dot-getVecNames.R R/dot-normCounts.R R/dot-permTestDiffAsso.R R/dot-sparsify.R R/dot-zeroTreat.R R/editLabels.R R/gcoda.R R/helpers.R R/installNetCoMiPacks.R R/multAdjust.R R/netAnalyze.R R/netAnalyze_methods.R R/netCompare.R R/netCompare_methods.R R/netConstruct.R R/plot.diffNet.R R/plot.microNetProps.R R/plotHeat.R R/renameTaxa.R R/testGCM.R R/transform.R index.Rmd index.md man/NetCoMi-package.Rd man/calcGCD.Rd man/calcGCM.Rd man/cclasso.Rd man/colToTransp.Rd man/createAssoPerm.Rd man/diffnet.Rd man/dot-boottest.Rd man/dot-calcAssociation.Rd man/dot-calcProps.Rd man/dot-getVecNames.Rd man/dot-permTestDiffAsso.Rd man/editLabels.Rd man/gcoda.Rd man/installNetCoMiPacks.Rd man/multAdjust.Rd man/netAnalyze.Rd man/netCompare.Rd man/netConstruct.Rd man/plot.diffnet.Rd man/plot.microNetProps.Rd man/plotHeat.Rd man/print.GCD.Rd man/renameTaxa.Rd man/summarize.microNetComp.Rd man/summarize.microNetProps.Rd man/testGCM.Rd readme.Rmd readme.md renv/activate.R tests/testthat.R tests/testthat/test_GCD_plotHeat.R tests/testthat/test_netAnalyze.R tests/testthat/test_netCompare_diffnet.R tests/testthat/test_netConstruct.R vignettes/NetCoMi.Rmd vignettes/asso_as_input.Rmd vignettes/create_asso_perm.Rmd vignettes/cross_domain_networks.Rmd vignettes/diffnet.Rmd vignettes/dissimilarity_networks.Rmd vignettes/net_comparison.Rmd vignettes/soil_example.Rmd