Files in BayesianFROC
FROC Analysis by Bayesian Approaches

NEWS.md
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
data/dataList.Chakra.Web.rda
data/data_of_36_readers_and_a_single_modality.rda
data/mu_truth.rda
data/ddd.rda
data/dataList.High.rda
data/ddddd.rda
data/dataList.Chakra.2.rda
data/d.rda
data/data.hier.ficitious.rda
data/dataList.one.modality.rda
data/dataList.high.ability.rda
data/dataList.Chakra.4.rda
data/dataList.Chakra.1.with.explantation.rda
data/data.bad.fit.rda
data/p_truth.rda
data/dataList.Chakra.3.rda
data/dz.rda
data/dataList.low.ability.rda
data/dddddd.rda
data/dd.rda
data/data.MultiReaderMultiModality.rda
data/z.rda
data/ddddddd.rda
data/dataList.divergent.transition.in.case.of.srsc.rda
data/dddd.rda
data/v_truth.rda
data/z_truth.rda
data/data_2modaities_2readers_3confidence.rda
data/mu.rda
data/dataList.Chakra.1.rda
data/data.nonconverge.srsc.rda
data/v.rda
data/data.SingleReaderSingleModality.rda
data/dd.orderd.rda
data/dataList.Chakra.Web.orderd.rda
data/dataList.Low.rda
R/chi_square_goodness_of_fit.R R/fit_GUI_dashboard.R R/dark_theme.R R/size_of_return_value.R R/install_imports.R R/error_message.R R/convertFromJafroc.R R/explanation_about_package_BayesianFROC.R R/extract_data_frame_from_dataList_MRMC.R R/Draw_an_area_of_AUC_for_srsc.R R/dataset_creator_new_version.R R/ppp.R R/download.R R/document_true_param.R R/hit_rate_adjusted_from_the_vector_p.R R/print_minimal_reproducible_code.R R/QQQ.R R/CoronaVirus_Disease_2019.R R/stability_of_AUC_ranking_in_case_of_MRMC_data.R R/StartupMessage.R R/sbcVer2.R R/viewdata.R R/ConfirmConvergence.R R/get_posterior_variance.R R/summarise_MRMC.R R/DrawCurves.R R/StatisticForANOVA.R R/Author_vs_Chakraborty_for_AUC.R R/initial_values_specification_for_stan_in_case_of_MRMC.R R/css_shiny.R R/FROC_via_ggplot.R R/Rprofile.R R/without_double_quote.R R/draw_latent_distribution.R R/validation_MRMC_Create_dataList_MRMC_Hit_from_rate_etc.R R/Simulation_Based_Calibration.R R/fit_Bayesian_FROC.R R/prior_print.R R/method.R R/development_Tools_and_Memorandum.R R/AFROC.R R/priorResearch.R R/fit_GUI.R R/Close_all_graphic_devices.R R/pause.R R/m_q_c_vector_from_M_Q_C.R R/sortAUC.R R/waic.R R/array_of_hit_and_false_alarms_from_vector.R R/summary_EAP_CI_srsc.R R/check_rhat.R R/BayesianFROC.R R/prior_predictor.R R/extract_EAP_by_array.R R/document_dataset_MRMC.R R/showGraphicalModel.R R/Test_Null_Hypothesis_that_all_modalities_are_same.R R/ex.R R/array_easy_example.R R/empty_cell_shiny.R R/give_name_srsc_data.R R/sbc_new.R R/fffaaabbb.R R/create_dataset.R R/methods_print.R R/snippet_for_BayesianFROC.R R/fit_GUI_simple_from_apppp_file.R R/minimal_model_MRMC.R R/fit_MRMC_versionTWO.R R/minimal_model_MRMC2_to_check_causes.R R/minimal_model_MRMC2.R R/Make_TeX_file_for_summary.R R/operator.R R/demo_Bayesian_FROC_without_pause.R R/error_message_on_imaging_device_rhat_values.R R/fut_GUI_MRMC_shiny.R R/demo_Bayesian_FROC.R R/plot_FPF_and_TPF_from_a_dataset.R R/dataset_creator_for_many_Readers.R R/pairs_plot_if_divergent_transition_occurred.R R/document_dataset_srsc.R R/dataset_creator_by_specifying_only_M_Q.R R/minimal_model_MRMC_development.R R/multiple_degit_plot.R R/Stan_model_minimal_incomplete.R R/validation_MRMC_UNDER_CONSTRUCTION.R R/save_an_R_object.R R/metadata.R R/stanfitExtended.R R/summary_AUC_comparison_MRMC.R R/clearWorkspace.R R/p_value_of_the_Bayesian_sense_for_chi_square_goodness_of_fit.R R/methods.R R/show_codes_in_my_manuscript.R R/foo_of_a_List_of_Arrays.R R/layout.R R/validation_error_srsc.R R/check_hit_is_less_than_NL.R R/small_margin.R R/sbc_MRMC.R R/the_row_number_of_logical_vector.R R/Phi__and__Phi_inv.R R/When_install.R R/apply_foo.R R/modelComparison.R R/make_true_parameter_MRMC.R R/explanation_for_what_curves_are_drawn.R R/color.R R/pnorm_or_qnorm.R R/plotFROC.R R/fit_GUI_MRMC.R R/fit_GUI_MRMC_new.R R/minimal_model_MRMC3.R R/fit_GUI_Shiny.R demo/demo_drawcurves_srsc.R demo/demo_SBC.R demo/demo_ppp.R demo/demo_for_reviewers_of_my_manuscript.R demo/demo_for_traditional_FROC_models_with_multinomial_distribution.R
demo/00Index
demo/demo_srsc.R demo/demo_MRMC.R demo/demo_stan.R vignettes/Very_Very_Very_Brief_Description_MRMC.Rmd
vignettes/mystyle.css
man/plot_curve_and_hit_rate_and_false_rate_simultaneously.Rd man/CoronaVirus_Disease_2019_prevalence.Rd man/extract_parameters_from_replicated_models.Rd man/extractAUC.Rd man/hits_false_alarms_creator_from_thresholds.Rd man/error_srsc.Rd man/fooo.Rd man/dataList.Chakra.4.Rd man/ppp_MRMC.Rd man/dataList.low.ability.Rd man/from_array_to_vector.Rd man/convertFromJafroc.Rd man/inv_Phi.Rd man/AFROC_curve.Rd man/Close_all_graphic_devices.Rd man/fit_MRMC.Rd man/plotFROC.Rd man/rank_statistics_with_two_parameters.Rd man/viewdata_srsc.Rd man/plot-stanfitExtended-missing-method.Rd man/viewdata_MRMC.Rd man/extract_data_frame_from_dataList_MRMC.Rd man/dd.orderd.Rd man/false_and_its_rate_creator.Rd man/draw_latent_noise_distribution.Rd man/summary_AUC_comparison_MRMC_without_crayon.Rd man/get_samples_from_Posterior_Predictive_distribution.Rd man/prior_print_MRMC.Rd man/print_stanfitExtended.Rd man/data.hier.ficitious.Rd man/fit_GUI_dashboard.Rd man/replicate_model_MRMC.Rd man/ddd.Rd man/Simulation_Based_Calibration_single_reader_single_modality_via_rstan_sbc.Rd man/error_srsc_error_visualization.Rd man/StatisticForANOVA.Rd man/data.bad.fit.Rd man/seq_array_ind.Rd man/d.Rd man/fit_Bayesian_FROC.Rd man/demo_Bayesian_FROC_without_pause.Rd man/data_of_36_readers_and_a_single_modality.Rd man/fffaaabbb.Rd man/flatnames.Rd man/Draw_AUC.Rd man/show_codes_in_my_manuscript.Rd man/DrawCurves_MRMC_pairwise.Rd man/Empirical_FROC_via_ggplot.Rd man/dataset_creator_for_many_Readers.Rd man/chi_square_goodness_of_fit_from_input_all_param_MRMC.Rd man/stanfitExtended.Rd man/print-stanfitExtended-method.Rd man/error_srsc_variance_visualization.Rd man/CoronaVirus_Disease_2019.Rd man/Draw_a_simulated_data_set_and_Draw_posterior_samples.Rd man/replicate_MRMC_dataList.Rd man/dddddd.Rd man/extract_estimates_MRMC.Rd man/metadata_srsc_per_image.Rd man/z_truth.Rd man/p.Rd man/check_rhat.Rd man/array_easy_example.Rd man/v.Rd man/plot_test.Rd man/plot_FPF_TPF_via_dataframe_with_split_factor.Rd man/dataset_creator_by_specifying_only_M_Q.Rd man/DrawCurves_MRMC_pairwise_BlackWhite.Rd man/error_message.Rd man/extract_EAP_by_array.Rd man/dataset_creator_new_version.Rd man/create_dataList_MRMC.Rd man/dataList.Low.Rd man/dz.Rd man/array_of_hit_and_false_alarms_from_vector.Rd man/Simulation_Based_Calibration_via_rstan_sbc_MRMC.Rd man/initial_values_specification_for_stan_in_case_of_MRMC.Rd man/fit_srsc.Rd man/ddddd.Rd man/ppp_srsc.Rd man/draw_latent_signal_distribution.Rd man/dataList.Chakra.Web.Rd man/fit_GUI_MRMC.Rd man/data.MultiReaderMultiModality.Rd man/ConfirmConvergence.Rd man/make_TeX.Rd man/pause.Rd man/pairs_plot_if_divergent_transition_occurred.Rd man/hit_rate_adjusted_from_the_vector_p.Rd man/dataList.High.Rd man/metadata_to_DrawCurve_MRMC.Rd man/Author_vs_classic_for_AUC.Rd man/data.nonconverge.srsc.Rd man/false_and_its_rate_creator_MRMC.Rd man/TRUE.Counter.in.vector.Rd man/plot_FPF_and_TPF_from_a_dataset.Rd man/data_2modaities_2readers_3confidence.Rd man/DrawCurves_MRMC_pairwise_col.Rd man/ddddddd.Rd man/foo.Rd man/z_from_dz.Rd man/fit_MRMC_versionTWO.Rd man/dataList.Chakra.2.Rd man/dark_theme.Rd man/z.Rd man/viewdata.Rd man/Phi_inv.Rd man/explanation_for_what_curves_are_drawn.Rd man/Confirm_hit_rates_are_correctly_made_in_case_of_MRMC.Rd man/error_message_on_imaging_device_rhat_values.Rd man/validation.dataset_srsc.Rd man/stan_model_of_sbc.Rd man/pnorm_or_qnorm.Rd man/ggplotFROC.Rd man/Credible_Interval_for_curve.Rd man/showGM.Rd man/Draw_an_area_of_AUC_for_srsc.Rd man/hits_rate_creator.Rd man/print_minimal_reproducible_code_in_case_of_MRMC.Rd man/ggplotFROC.EAP.Rd man/Phi.Rd man/DrawCurves_MRMC.Rd man/dataList.divergent.transition.in.case.of.srsc.Rd man/metadata_to_fit_MRMC.Rd man/fit_Null_hypothesis_model_to_.Rd man/data.SingleReaderSingleModality.Rd man/Draw_a_prior_sample.Rd man/v_truth.Rd man/check_hit_is_less_than_NL.Rd man/Stan_code_validation.Rd man/summary_AUC_comparison_MRMC.Rd man/AFROC.Rd man/chi_square_goodness_of_fit.Rd man/dataList.Chakra.3.Rd man/ppp.Rd man/the_row_number_of_logical_vector.Rd man/priorResearch.Rd man/dd.Rd man/dataList.Chakra.1.with.explantation.Rd man/small_margin.Rd man/prior_predictor.Rd man/dddd.Rd man/hits_creator_from_rate.Rd man/fit_GUI_Shiny.Rd man/waic.Rd man/mu_truth_creator_for_many_readers_MRMC_data.Rd man/mu_truth.Rd man/foo_of_a_List_of_Arrays.Rd man/prior_print_srsc.Rd man/mu.Rd man/FROC_curve.Rd man/sortAUC.Rd man/dataList.one.modality.Rd man/clearWorkspace.Rd man/give_name_srsc_data.Rd man/install_imports.Rd man/p_truth.Rd man/fit_GUI_Shiny_MRMC.Rd man/draw.CFP.CTP.from.dataList.Rd man/snippet_for_BayesianFROC.Rd man/make_true_parameter_MRMC.Rd man/chi_square_goodness_of_fit_from_input_all_param.Rd man/summary_AUC_comparison_MRMC_with_crayon.Rd man/flat_one_par.Rd man/DrawCurves_srsc.Rd man/fit_a_model_to.Rd man/validation.draw_srsc.Rd man/comparison.Rd man/fit_GUI_simple_from_apppp_file.Rd man/Draw_a_simulated_data_set.Rd man/compare.Rd man/plot_empirical_FROC_curves.Rd man/dataList.Chakra.Web.orderd.Rd man/dataList.high.ability.Rd man/Chi_square_goodness_of_fit_in_case_of_MRMC_Posterior_Mean.Rd man/DrawCurves.Rd man/summary_EAP_CI_srsc.Rd man/error_MRMC.Rd man/fit_GUI_MRMC_new.Rd man/extract_EAP_CI.Rd man/Simulation_Based_Calibration_histogram.Rd man/v_truth_creator_for_many_readers_MRMC_data.Rd man/create_dataset.Rd man/dataList.Chakra.1.Rd man/give_name_srsc_CFP_CTP_vector.Rd man/BayesianFROC.Rd man/grapes-greater-than-greater-than-grapes.Rd man/size_of_return_value.Rd man/fit_GUI.Rd man/summarize_MRMC.Rd man/hits_from_thresholds.Rd man/Test_Null_Hypothesis_that_all_modalities_are_same.Rd man/p_value_of_the_Bayesian_sense_for_chi_square_goodness_of_fit.Rd man/sbcc.Rd man/chi_square_at_replicated_data_and_MCMC_samples_MRMC.Rd man/get_posterior_variance.Rd man/explanation_about_package_BayesianFROC.Rd man/m_q_c_vector_from_M_Q_C.Rd man/demo_Bayesian_FROC.Rd
inst/CITATION
inst/doc/Very_Very_Very_Brief_Description_MRMC.Rmd
inst/doc/Very_Very_Very_Brief_Description_MRMC.html
inst/doc/Very_Very_Very_Brief_Description_MRMC.R
inst/extdata/Model_srsc.stan
inst/extdata/Model_srsc_prototype.stan
inst/extdata/Model_MRMC_reparametrized.stan
inst/extdata/Model_MRMC.stan
inst/extdata/JAFROC_data.xlsx
inst/extdata/Model_Hiera_versionTWO.stan
inst/extdata/Model_srsc_multinomial.stan
inst/extdata/Model_ANOVA.stan
inst/extdata/SBCver2.stan
inst/extdata/Model_Hiera_versionTHREE.stan
inst/extdata/SBC_MRMC.stan
inst/extdata/null_hier.stan
inst/extdata/Model_srsc_reparametrized.stan
inst/extdata/SBC_reparametrized.stan
inst/extdata/SBC.stan
inst/extdata/Model_Hiera_OneModalityMultipleReader_TargetFormulation.stan
inst/extdata/Model_MRMC_non_hierarchical.stan
inst/extdata/Model_MRMC_prototype.stan
inst/myappp/ui.R inst/myappp/server.R
inst/myappp/www/styles.css
inst/myapp/ui.R inst/myapp/server.R
inst/myapp/www/styles.css
inst/myapp/www/color_change.js
BayesianFROC documentation built on July 8, 2020, 6:48 p.m.