Global functions | |
---|---|
EWCE | Man page |
EWCE-package | Man page |
add_res_to_merging_list | Man page Source code |
assign_cores | Man page Source code |
bin_columns_into_quantiles | Man page Source code |
bin_specificity_into_quantiles | Man page Source code |
bootstrap_enrichment_test | Man page Source code |
bootstrap_plot | Man page Source code |
bootstrap_plots_for_transcriptome | Man page Source code |
calculate_meanexp_for_level | Man page Source code |
calculate_specificity_for_level | Man page Source code |
cell_list_dist | Man page Source code |
cells_in_ctd | Source code |
check_annotLevels | Man page Source code |
check_args_for_bootstrap_plot_generation | Man page Source code |
check_bootstrap_args | Man page Source code |
check_controlled_args | Man page Source code |
check_ewce_expression_data_args | Man page Source code |
check_ewce_genelist_inputs | Man page Source code |
check_full_results | Man page Source code |
check_generate_controlled_bootstrap_geneset | Man page Source code |
check_group_name | Man page Source code |
check_mtc_method | Source code |
check_nas | Man page Source code |
check_numeric | Man page Source code |
check_percent_hits | Man page Source code |
check_sce | Man page Source code |
check_species | Man page Source code |
compute_gene_counts | Man page Source code |
compute_gene_scores | Man page Source code |
controlled_geneset_enrichment | Man page Source code |
convert_new_ewce_to_old | Man page Source code |
convert_old_ewce_to_new | Man page Source code |
create_background_multilist | Man page Source code |
create_list_network | Man page Source code |
create_quadrants | Source code |
ctd_to_sce | Man page Source code |
delayedarray_normalize | Man page Source code |
drop.uninformative.genes | Source code |
drop_nonexpressed_cells | Man page Source code |
drop_nonexpressed_genes | Man page Source code |
drop_uninformative_genes | Man page Source code |
dt_to_df | Man page Source code |
ewce_expression_data | Man page Source code |
ewce_plot | Man page Source code |
example_bootstrap_results | Man page Source code |
example_transcriptome_results | Man page Source code |
extract_matrix | Man page Source code |
filter_ctd_genes | Man page Source code |
filter_genes_without_1to1_homolog | Man page Source code |
filter_nonorthologs | Man page Source code |
filter_variance_quantiles | Man page Source code |
fix_bad_hgnc_symbols | Man page Source code |
fix_bad_mgi_symbols | Man page Source code |
fix_celltype_names | Man page Source code |
fix_celltype_names_full_results | Man page Source code |
generate_bootstrap_plots | Man page Source code |
generate_bootstrap_plots_exp_mats | Source code |
generate_bootstrap_plots_for_transcriptome | Man page Source code |
generate_celltype_data | Man page Source code |
generate_controlled_bootstrap_geneset | Man page Source code |
get_celltype_table | Man page Source code |
get_ctd_levels | Man page Source code |
get_ctd_matrix_names | Man page Source code |
get_exp_data_for_bootstrapped_genes | Man page Source code |
get_sig_results | Man page Source code |
get_summed_proportions | Man page Source code |
get_summed_proportions_iterate | Source code |
is_32bit | Man page Source code |
is_celltypedataset | Man page Source code |
is_ctd_standardised | Man page Source code |
is_delayed_array | Man page Source code |
is_matrix | Man page Source code |
is_sparse_matrix | Man page Source code |
list_species | Man page Source code |
load_rdata | Man page Source code |
max_ctd_depth | Man page Source code |
merge_ctd | Man page Source code |
merge_sce | Man page Source code |
merge_sce_list | Man page Source code |
merge_two_expfiles | Man page Source code |
merged_ewce | Man page Source code |
message_parallel | Man page Source code |
messager | Man page Source code |
myScalesComma | Man page Source code |
plot_ctd | Man page Source code |
plot_log_bootstrap_distributions | Man page Source code |
plot_with_bootstrap_distributions | Man page Source code |
prep.dendro | Man page Source code |
prep_dendro | Man page Source code |
prepare_genesize_control_network | Man page Source code |
prepare_tt | Man page Source code |
rNorm | Source code |
report_dge | Man page Source code |
report_results | Man page Source code |
run_deseq2 | Man page Source code |
run_limma | Man page Source code |
run_mast | Man page Source code |
sce_lists_apply | Man page Source code |
sce_merged_apply | Man page Source code |
sct_normalize | Man page Source code |
standardise_ctd | Man page Source code |
theme_graph | Man page Source code |
to_dataframe | Man page Source code |
to_delayed_array | Man page Source code |
to_sparse_matrix | Man page Source code |
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