barzine/barzinePhdR
Code developed while and for my PhD thesis at the EMBL-EBI

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441
Source code
24
Man pages
219
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barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI
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API

API for barzine/barzinePhdR
Code developed while and for my PhD thesis at the EMBL-EBI

Global functions
%<=% Man page
%>=% Man page
.onAttach Source code
.onLoad Source code
Cumulative_spe Man page Source code
DrawVenn Man page Source code
ExpressedGeneInTissue Man page Source code
Intersect Man page Source code
List Man page
ListOfExpressedGenes Man page Source code
Load Man page Source code
NAto0 Man page Source code
Read.table Man page Source code
RowMad Man page Source code
RowMeans Man page Source code
RowMedians Man page Source code
RowMode Man page Source code
Union Man page Source code
[<-.result Man page
`%<=%` Source code
`%>=%` Source code
add.qual.att Man page Source code
barplotCommonGenesUnique2D Man page Source code
barplotCommonGenesUnique3D Man page Source code
bibarplotsDiversityCond Man page Source code
bluered Man page Source code
boolDF2numeric Man page Source code
cat.html Man page Source code
change.localID Man page Source code
checkConformity Man page Source code
clean.HTSc Man page Source code
clean.infinite Man page Source code
cleanNames Man page Source code
cleanReadAnnot Man page Source code
cleantable Man page Source code
cleanupVec Source code
colCbc Man page Source code
colMax Man page Source code
colMin Man page Source code
colSelect Man page Source code
colSelect2 Man page Source code
colorpanel Man page Source code
comp_cor_log2 Man page Source code
comp_ratio_sd Man page Source code
complement2nbGenesPerCond.unique Man page Source code
completeDF.t_test.CorrMat_identical.vs.different Man page Source code
computeBreadth Man page Source code
compute_gene_cor Man page Source code
compute_gene_cor_save Man page Source code
compute_permuted_cor Man page Source code
compute_permuted_corQ Man page Source code
compute_tissue_corr_matrix Man page Source code
createDFhXg Man page Source code
createGoAnnot Man page Source code
createTableResults_basics Man page Source code
creationDf.gxa Man page Source code
cross.select Man page Source code
cross.selectCond Man page Source code
cross.sharedDistrib Man page Source code
cross.sharedDistrib_firstLast Man page Source code
crudeStrip Man page Source code
cumulSpe Man page Source code
cumulSpeSimulAggregated Man page Source code
cutoff Man page Source code
dataset.HTSc Man page Source code
dataset.randomize Man page Source code
dataset_irap Man page Source code
datatable.custom Man page Source code
density_plot Man page Source code
df.Strip Man page Source code
df.StripLine Man page Source code
df.cutoff Man page Source code
df.cutoff2 Man page Source code
df.fill Man page Source code
drawOverlapHeatmaps Man page Source code
ebiRank Man page Source code
enhancedTissue Man page Source code
enrichedTissue Man page Source code
evolCorrCumul Man page Source code
evolCvCorrCumul Man page Source code
excludeGenes Man page Source code
excludeRows Man page Source code
extract.HTSc Man page Source code
extract.irap Man page Source code
extractDendroFromPlotTD Man page Source code
extractDendroTissueDistance Man page Source code
extractSpe Man page Source code
extractWithTag Man page Source code
extractWithinSampleAbundance Man page
extractWithinSampleTop3Abundance Man page
factorDF2string Man page Source code
factoring Man page Source code
factoring.rbind Man page Source code
filtre.dataset Man page Source code
fixNamesGtex Man page Source code
fixNamesUhlen Man page Source code
g_legend Man page Source code
gen.add.qual.att Man page Source code
geneClassify Man page Source code
geneClassify.Q Man page Source code
geneScatters Man page Source code
getEpsilon Man page Source code
gg_color_hue Man page Source code
go2genes Man page Source code
greenred Man page Source code
hampel.test Man page Source code
heatmap.2 Man page
heatmapAlpabet Man page Source code
heatmapAlphabet Man page Source code
heatmapWithClustering Man page Source code
here Source code
initialise Man page Source code
internalJaccardIndMatrix Man page Source code
jaccardInd Man page Source code
lg.format Man page Source code
listFromFile Man page Source code
listFromFileBiomart Man page Source code
listgenes Man page Source code
load_and_check_3DF Man page Source code
log2.na Man page Source code
mHeatmap Man page Source code
mHeatmapTC Man page Source code
make.2ldf Man page Source code
make.3ldf Man page Source code
matchColCond Man page Source code
matrix.overlap_res Man page Source code
maxCond.df Man page Source code
merge_biol_rep Man page Source code
merge_replicates Man page Source code
merge_tech_rep Man page Source code
mixed.high Man page Source code
mixed.high2 Man page Source code
mixed.low Man page Source code
mixed.low2 Man page Source code
mkMatrix Man page Source code
multi.add.qual.att Man page Source code
multibarplotsDiversityCond Man page Source code
nameID Man page Source code
nbGenesPerCond Man page Source code
nbGenesPerCond.unique Man page Source code
nl1d Man page Source code
noMoreFactor Man page Source code
overlapProtTrans.Specific Man page Source code
overlapSortCumul2DF Man page Source code
overlapSortCumul5DF Man page Source code
overlapSpeProtmRNA Man page Source code
plotGOHeatmap Man page Source code
plotTissuesDistance Man page Source code
plotUniq.distrib Man page Source code
plot_distribDF Man page Source code
plot_xsharedDistrib Man page Source code
prefix Man page Source code
prefixv Man page Source code
prep Source code
prep2 Source code
presentData Man page Source code
printDebug Man page Source code
protSpe Man page Source code
qLoad Man page Source code
rank.Atlas Man page Source code
rankSpe Man page Source code
ratioSpe Man page Source code
ratioSpe.1 Man page Source code
read.list Man page Source code
redblue Man page Source code
redgreen Man page Source code
refGraphDF Man page Source code
relative.GXenrichement Man page Source code
relative.GXenrichement2 Man page Source code
relnum.GXenrichement Man page Source code
removeClusters Man page Source code
replotCumulSpeSimulAggregated Man page Source code
revCustom Man page Source code
revCustomMatrixDist Man page Source code
rowCV Man page Source code
rowMax Man page Source code
rowMin Man page Source code
rowSD Man page Source code
rowVar Man page Source code
rpkm2tpm Man page Source code
saveToFile Man page Source code
saveWithName Man page Source code
save_df Man page Source code
scatplot Man page Source code
scatplot.log2 Man page Source code
selectSpecific Man page Source code
setDebug Man page Source code
setEpsilon Man page Source code
sharedBreadth Man page Source code
sharedBreadth_firstLast Source code
signifDF Man page Source code
simpleCap Man page Source code
simpleCap2 Man page Source code
simpleVecSpe Source code
single.factoring Man page Source code
single.factoring2 Man page Source code
sortUhlenClassInOne Man page Source code
sortedGenesCorr Man page Source code
stamped Man page Source code
stat.mode Man page Source code
strip Man page Source code
substrRight Man page Source code
suffix Man page Source code
t_test.CorrMat_identical.vs.different Man page Source code
t_test.Mat_identical.vs.different Man page Source code
tableGeneIDdesc Man page Source code
test_CorrMat_identical_different Man page Source code
theme_cbw Man page Source code
theme_legacy Man page
theme_minimaliste Man page Source code
tissuesDistance Man page Source code
topCommonGenes Man page Source code
topgenes.corCluster Man page Source code
topgenes.corClusterDraw Man page Source code
topgenes.corClusterDraw_log Man page Source code
topgenes.corCluster_log Man page Source code
trimSpace Man page Source code
ubi.high Man page Source code
ubi.low Man page Source code
ubi.strict Man page Source code
unByteCode Source code
undetected Man page Source code
unmatchedRowsAbyB Man page Source code
unmatchedRowsAbyBC Man page Source code
usablePath Man page Source code
vennPlot_spe Man page Source code
wrap.compute_permuted_corQ_save Man page Source code
wrap.scatplot.log2 Man page Source code
wtDF Man page Source code
xsharedDistrib Man page Source code
barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.

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