API for pinin4fjords/shinyngs
Shiny apps for NGS data
| Global functions | |
|---|---|
| ExploratorySummarizedExperiment | Man page Source code |
| ExploratorySummarizedExperiment-class | Man page |
| ExploratorySummarizedExperimentList | Man page Source code |
| ExploratorySummarizedExperimentList-class | Man page |
| [,ExploratorySummarizedExperimentList,ANY,missing,ANY-method | Man page |
| [,ExploratorySummarizedExperimentList,logical,missing,ANY-method | Man page |
| [,ExploratorySummarizedExperimentList,numeric,missing,ANY-method | Man page |
| addPoints | Man page Source code |
| addTextLabels | Man page Source code |
| adjustLayout | Man page Source code |
| annotatedHeatmap | Man page Source code |
| anova_pca_metadata | Man page Source code |
| assaydatatable | Man page Source code |
| assaydatatableInput | Man page Source code |
| assaydatatableOutput | Man page Source code |
| barcode_plot | Man page Source code |
| barplot | Man page Source code |
| barplotInput | Man page Source code |
| barplotOutput | Man page Source code |
| bootstrapMedian | Man page Source code |
| boxplot | Man page Source code |
| boxplotInput | Man page Source code |
| boxplotOutput | Man page Source code |
| calculateDendrogram | Man page Source code |
| calculateDist | Man page Source code |
| calculatePCAFractionExplained | Man page Source code |
| cardinalNumericField | Man page Source code |
| checkListIsSubset | Man page Source code |
| chipseq | Man page Source code |
| chipseqInput | Man page Source code |
| chooseGroupingVariables | Man page Source code |
| clustering | Man page Source code |
| clusteringDendrogram | Man page Source code |
| clusteringInput | Man page Source code |
| clusteringOutput | Man page Source code |
| colGeomMeans | Man page Source code |
| colMedians | Man page Source code |
| colormaker | Man page Source code |
| colormakerInput | Man page Source code |
| compilePCAData | Man page Source code |
| compile_contrast_data | Man page Source code |
| cond_log2_transform_assays | Man page Source code |
| cond_log2_transform_matrix | Man page Source code |
| contrasts | Man page Source code |
| contrastsInput | Man page Source code |
| contrastsOutput | Man page Source code |
| convertIds | Man page Source code |
| dendro | Man page Source code |
| dendroInput | Man page Source code |
| dendroOutput | Man page Source code |
| dexseqplot | Man page Source code |
| dexseqplotInput | Man page Source code |
| dexseqplotOutput | Man page Source code |
| dexseqtable | Man page Source code |
| dexseqtableInput | Man page Source code |
| dexseqtableInputFields | Man page Source code |
| dexseqtableOutput | Man page Source code |
| differentialtable | Man page Source code |
| differentialtableInput | Man page Source code |
| differentialtableOutput | Man page Source code |
| drawLines | Man page Source code |
| eselistFromYAML | Man page Source code |
| eselistfromConfig | Man page Source code |
| evaluateCardinalFilter | Man page Source code |
| experimenttable | Man page Source code |
| experimenttableInput | Man page Source code |
| experimenttableOutput | Man page Source code |
| fieldSets | Man page Source code |
| foldChange | Man page Source code |
| foldchangeplot | Man page Source code |
| foldchangeplotInput | Man page Source code |
| foldchangeplotOutput | Man page Source code |
| gene | Man page Source code |
| geneBarplot | Man page Source code |
| geneInput | Man page Source code |
| geneModelPlot | Man page Source code |
| geneOutput | Man page Source code |
| geneselect | Man page Source code |
| geneselectInput | Man page Source code |
| genesetanalysistable | Man page Source code |
| genesetanalysistableInput | Man page Source code |
| genesetanalysistableOutput | Man page Source code |
| genesetbarcodeplot | Man page Source code |
| genesetbarcodeplotInput | Man page Source code |
| genesetbarcodeplotOutput | Man page Source code |
| genesetselect | Man page Source code |
| genesetselectInput | Man page Source code |
| geom_mean | Man page Source code |
| getExtension | Man page Source code |
| getSeparator | Man page Source code |
| ggplot_boxplot | Man page Source code |
| ggplot_densityplot | Man page Source code |
| ggplotify | Man page Source code |
| groupby | Man page Source code |
| groupbyInput | Man page Source code |
| heatmap | Man page Source code |
| heatmapInput | Man page Source code |
| heatmapOutput | Man page Source code |
| hiddenInput | Man page Source code |
| idToLabel | Man page Source code |
| illuminaarray | Man page Source code |
| illuminaarrayInput | Man page Source code |
| illuminaarrayqc | Man page Source code |
| illuminaarrayqcInput | Man page Source code |
| illuminaarrayqcOutput | Man page Source code |
| inlineField | Man page Source code |
| interactiveHeatmap | Man page Source code |
| interleaveColumns | Man page Source code |
| is_valid_positive_integer_vector | Man page Source code |
| labelMatrix | Man page Source code |
| labelselectfield | Man page Source code |
| labelselectfieldInput | Man page Source code |
| linkMatrix | Man page Source code |
| madScore | Man page Source code |
| makeAnnotationColors | Man page Source code |
| makeColorScale | Man page Source code |
| makeContrastControl | Man page Source code |
| makeContrastFilterSet | Man page Source code |
| makePackageCitation | Man page Source code |
| maplot | Man page Source code |
| maplotInput | Man page Source code |
| maplotOutput | Man page Source code |
| modalInput | Man page Source code |
| modalOutput | Man page Source code |
| na.replace | Man page Source code |
| nlines | Man page Source code |
| pca | Man page Source code |
| pcaInput | Man page Source code |
| pcaOutput | Man page Source code |
| plotdownload | Man page Source code |
| plotdownloadInput | Man page Source code |
| plotly_boxplot | Man page Source code |
| plotly_densityplot | Man page Source code |
| plotly_quartiles | Man page Source code |
| plotly_scatterplot | Man page Source code |
| prepareApp | Man page Source code |
| prettifyGeneSetName | Man page Source code |
| prettifyVariablename | Man page Source code |
| pushToList | Man page Source code |
| read_contrasts | Man page Source code |
| read_differential | Man page Source code |
| read_matrix | Man page Source code |
| read_metadata | Man page Source code |
| readreports | Man page Source code |
| readreportsInput | Man page Source code |
| readreportsOutput | Man page Source code |
| rnaseq | Man page Source code |
| rnaseqInput | Man page Source code |
| rowmetatable | Man page Source code |
| rowmetatableInput | Man page Source code |
| rowmetatableOutput | Man page Source code |
| runPCA | Man page Source code |
| sampleselect | Man page Source code |
| sampleselectInput | Man page Source code |
| scatterplot | Man page Source code |
| scatterplotInput | Man page Source code |
| scatterplotOutput | Man page Source code |
| scatterplotcontrols | Man page Source code |
| scatterplotcontrolsInput | Man page Source code |
| selectVariableGenes | Man page Source code |
| selectmatrix | Man page Source code |
| selectmatrixInput | Man page Source code |
| shinyngs | Man page |
| simpleApp | Man page Source code |
| simpleSplit | Man page Source code |
| simpletable | Man page Source code |
| simpletableInput | Man page Source code |
| simpletableOutput | Man page Source code |
| simplifyContrastTable | Man page Source code |
| singleValidMatrix | Man page Source code |
| splitStringToFixedwidthLines | Man page Source code |
| static_scatterplot | Man page Source code |
| stringsToNamedVector | Man page Source code |
| summarisematrix | Man page Source code |
| summarisematrixInput | Man page Source code |
| summarizeMatrix | Man page Source code |
| summarySE | Man page Source code |
| ucfirst | Man page Source code |
| unpack.list | Man page Source code |
| upset | Man page Source code |
| upsetInput | Man page Source code |
| upsetOutput | Man page Source code |
| validate_indices | Man page Source code |
| validate_inputs | Man page Source code |
| volcanoplot | Man page Source code |
| volcanoplotInput | Man page Source code |
| volcanoplotOutput | Man page Source code |
